RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 NBPF3Q9H094 633 aa14.91□□□□□ -0.02
PNKP-217ENST00000625216 FEM1BQ9UK73 627 aa14.91□□□□□ -0.02
PNKP-217ENST00000625216 ZNF214Q9UL59 606 aaPredicted RBP14.91□□□□□ -0.02
PNKP-217ENST00000625216 ZMYM6O95789 1325 aa14.91□□□□□ -0.02
PNKP-217ENST00000625216 CCDC171Q6TFL3 1326 aa14.91□□□□□ -0.02
PNKP-217ENST00000625216 ATP2A1O14983 1001 aa14.9□□□□□ -0.02
PNKP-217ENST00000625216 ZBED4O75132 1171 aa14.9□□□□□ -0.02
PNKP-217ENST00000625216 PCP11498 1178 aaKnown RBP14.9□□□□□ -0.02
PNKP-217ENST00000625216 CTDSPL2Q05D32 466 aa14.9□□□□□ -0.02
PNKP-217ENST00000625216 SLFN13Q68D06 897 aa14.9□□□□□ -0.02
PNKP-217ENST00000625216 LHX8Q68G74 356 aa14.9□□□□□ -0.02
PNKP-217ENST00000625216 REPS2Q8NFH8 660 aa14.9□□□□□ -0.02
PNKP-217ENST00000625216 NUP88Q99567 741 aaPredicted RBP14.9□□□□□ -0.02
PNKP-217ENST00000625216 TEX13BQ9BXU2 312 aa14.9□□□□□ -0.02
PNKP-217ENST00000625216 FLRT1Q9NZU1 646 aa14.9□□□□□ -0.02
PNKP-217ENST00000625216 PLXNB2O15031 1838 aa14.89□□□□□ -0.03
PNKP-217ENST00000625216 H0YGN5 161 aa14.89□□□□□ -0.03
PNKP-217ENST00000625216 RANBP6O60518 1105 aaKnown RBP14.89□□□□□ -0.03
PNKP-217ENST00000625216 COBLO75128 1261 aa14.89□□□□□ -0.03
PNKP-217ENST00000625216 BMP3P12645 472 aa14.89□□□□□ -0.03
PNKP-217ENST00000625216 CCND3P30281 292 aaPredicted RBP14.89□□□□□ -0.03
PNKP-217ENST00000625216 NT5C2P49902 561 aa14.89□□□□□ -0.03
PNKP-217ENST00000625216 KCTD2Q14681 263 aa14.89□□□□□ -0.03
PNKP-217ENST00000625216 LRRC47Q8N1G4 583 aaKnown RBP14.89□□□□□ -0.03
PNKP-217ENST00000625216 CHURC1Q8WUH1 139 aa14.89□□□□□ -0.03
PNKP-217ENST00000625216 GMCL1Q96IK5 515 aa14.89□□□□□ -0.03
PNKP-217ENST00000625216 DIS3Q9Y2L1 958 aaKnown RBP14.89□□□□□ -0.03
PNKP-217ENST00000625216 CTDP1Q9Y5B0 961 aaPredicted RBP14.89□□□□□ -0.03
PNKP-217ENST00000625216 MYH8P13535 1937 aa14.88□□□□□ -0.03
PNKP-217ENST00000625216 EPB41L2O43491 1005 aaKnown RBP14.88□□□□□ -0.03
PNKP-217ENST00000625216 PLA2G6O60733 806 aa14.88□□□□□ -0.03
PNKP-217ENST00000625216 CYP2C19P33261 490 aa14.88□□□□□ -0.03
PNKP-217ENST00000625216 NOVP48745 357 aa14.88□□□□□ -0.03
PNKP-217ENST00000625216 OAZ1P54368 228 aa14.88□□□□□ -0.03
PNKP-217ENST00000625216 FAM160B2Q86V87 743 aa14.88□□□□□ -0.03
PNKP-217ENST00000625216 MMP19Q99542 508 aa14.88□□□□□ -0.03
PNKP-217ENST00000625216 KIF2CQ99661 725 aa14.88□□□□□ -0.03
PNKP-217ENST00000625216 SLC38A10Q9HBR0 1119 aa14.88□□□□□ -0.03
PNKP-217ENST00000625216 TCP11L1Q9NUJ3 509 aa14.88□□□□□ -0.03
PNKP-217ENST00000625216 STX8Q9UNK0 236 aa14.88□□□□□ -0.03
PNKP-217ENST00000625216 GREB1LQ9C091 1923 aaPredicted RBP14.88□□□□□ -0.03
PNKP-217ENST00000625216 EVI5O60447 810 aa14.87□□□□□ -0.03
PNKP-217ENST00000625216 SLC1A4P43007 532 aa14.87□□□□□ -0.03
PNKP-217ENST00000625216 MNX1P50219 401 aaPredicted RBP14.87□□□□□ -0.03
PNKP-217ENST00000625216 KIAA1211Q6ZU35 1233 aa14.87□□□□□ -0.03
PNKP-217ENST00000625216 STAG1Q8WVM7 1258 aa14.87□□□□□ -0.03
PNKP-217ENST00000625216 KIFC2Q96AC6 838 aa14.87□□□□□ -0.03
PNKP-217ENST00000625216 MAML3Q96JK9 1138 aa14.87□□□□□ -0.03
PNKP-217ENST00000625216 RNF41Q9H4P4 317 aaPredicted RBP14.87□□□□□ -0.03
PNKP-217ENST00000625216 C11orf49Q9H6J7 331 aa14.87□□□□□ -0.03
PNKP-217ENST00000625216 INCENPQ9NQS7 918 aa14.87□□□□□ -0.03
PNKP-217ENST00000625216 IL17RBQ9NRM6 502 aa14.87□□□□□ -0.03
PNKP-217ENST00000625216 DDX20Q9UHI6 824 aaKnown RBP14.87□□□□□ -0.03
PNKP-217ENST00000625216 NRBP1Q9UHY1 535 aa14.87□□□□□ -0.03
PNKP-217ENST00000625216 RLFQ13129 1914 aa14.87□□□□□ -0.03
PNKP-217ENST00000625216 TMEM232C9JQI7 657 aa14.86□□□□□ -0.03
PNKP-217ENST00000625216 CYBAP13498 195 aa14.86□□□□□ -0.03
PNKP-217ENST00000625216 CNGA1P29973 690 aa14.86□□□□□ -0.03
PNKP-217ENST00000625216 HSPA4P34932 840 aa14.86□□□□□ -0.03
PNKP-217ENST00000625216 ANP32AP39687 249 aaKnown RBP14.86□□□□□ -0.03
PNKP-217ENST00000625216 STAT2P52630 851 aa14.86□□□□□ -0.03
PNKP-217ENST00000625216 ZNF792Q3KQV3 632 aa14.86□□□□□ -0.03
PNKP-217ENST00000625216 SNRNP48Q6IEG0 339 aaKnown RBP14.86□□□□□ -0.03
PNKP-217ENST00000625216 RCSD1Q6JBY9 416 aa14.86□□□□□ -0.03
PNKP-217ENST00000625216 MFSD6Q6ZSS7 791 aa14.86□□□□□ -0.03
PNKP-217ENST00000625216 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.86□□□□□ -0.03
PNKP-217ENST00000625216 DIS3LQ8TF46 1054 aaKnown RBP14.86□□□□□ -0.03
PNKP-217ENST00000625216 TTC14Q96N46 770 aa14.86□□□□□ -0.03
PNKP-217ENST00000625216 TOMM22Q9NS69 142 aa14.86□□□□□ -0.03
PNKP-217ENST00000625216 FBXO40Q9UH90 709 aa14.86□□□□□ -0.03
PNKP-217ENST00000625216 RBM8AQ9Y5S9 174 aaKnown RBP14.86□□□□□ -0.03
PNKP-217ENST00000625216 TACC3Q9Y6A5 838 aa14.86□□□□□ -0.03
PNKP-217ENST00000625216 A0A0G2JMZ2 1700 aa14.86□□□□□ -0.03
PNKP-217ENST00000625216 ZNF213O14771 459 aa14.85□□□□□ -0.03
PNKP-217ENST00000625216 SEPT4O43236 478 aa14.85□□□□□ -0.03
PNKP-217ENST00000625216 SLC34A2O95436 690 aa14.85□□□□□ -0.03
PNKP-217ENST00000625216 MCCP23508 829 aa14.85□□□□□ -0.03
PNKP-217ENST00000625216 HABP4Q5JVS0 413 aaKnown RBP14.85□□□□□ -0.03
PNKP-217ENST00000625216 AKNAD1Q5T1N1 836 aa14.85□□□□□ -0.03
PNKP-217ENST00000625216 CPXCR1Q8N123 301 aa14.85□□□□□ -0.03
PNKP-217ENST00000625216 MSL3Q8N5Y2 521 aaKnown RBP14.85□□□□□ -0.03
PNKP-217ENST00000625216 CHST13Q8NET6 341 aa14.85□□□□□ -0.03
PNKP-217ENST00000625216 MAP4K1Q92918 833 aa14.85□□□□□ -0.03
PNKP-217ENST00000625216 DDX11Q96FC9 970 aa14.85□□□□□ -0.03
PNKP-217ENST00000625216 NMT2O60551 498 aa14.84□□□□□ -0.03
PNKP-217ENST00000625216 TOP1P11387 765 aaKnown RBP14.84□□□□□ -0.03
PNKP-217ENST00000625216 COL6A1P12109 1028 aa14.84□□□□□ -0.03
PNKP-217ENST00000625216 IKQ13123 557 aaPredicted RBP14.84□□□□□ -0.03
PNKP-217ENST00000625216 RRP12Q5JTH9 1297 aaKnown RBP14.84□□□□□ -0.03
PNKP-217ENST00000625216 ARRDC4Q8NCT1 418 aa14.84□□□□□ -0.03
PNKP-217ENST00000625216 TRPV1Q8NER1 839 aa14.84□□□□□ -0.03
PNKP-217ENST00000625216 DCAF4Q8WV16 495 aa14.84□□□□□ -0.03
PNKP-217ENST00000625216 IL17RAQ96F46 866 aa14.84□□□□□ -0.03
PNKP-217ENST00000625216 TINF2Q9BSI4 451 aa14.84□□□□□ -0.03
PNKP-217ENST00000625216 DSCC1Q9BVC3 393 aa14.84□□□□□ -0.03
PNKP-217ENST00000625216 RAVER2Q9HCJ3 691 aaKnown RBP14.84□□□□□ -0.03
PNKP-217ENST00000625216 CTNNA3Q9UI47 895 aa14.84□□□□□ -0.03
PNKP-217ENST00000625216 ISY1Q9ULR0 285 aaKnown RBP14.84□□□□□ -0.03
PNKP-217ENST00000625216 RIPK3Q9Y572 518 aa14.84□□□□□ -0.03
PNKP-217ENST00000625216 ZNF236Q9UL36 1845 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms