RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 BTNL9Q6UXG8 535 aa17.84■□□□□ 0.45
UPF1-206ENST00000598471 HOMER1Q86YM7 354 aa17.84■□□□□ 0.45
UPF1-206ENST00000598471 ADGRF4Q8IZF3 695 aa17.84■□□□□ 0.45
UPF1-206ENST00000598471 FAM177A1Q8N128 213 aaPredicted RBP17.84■□□□□ 0.45
UPF1-206ENST00000598471 FBXO18Q8NFZ0 1043 aa17.84■□□□□ 0.45
UPF1-206ENST00000598471 C12orf42Q96LP6 360 aa17.84■□□□□ 0.45
UPF1-206ENST00000598471 VAT1LQ9HCJ6 419 aa17.84■□□□□ 0.45
UPF1-206ENST00000598471 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.84■□□□□ 0.45
UPF1-206ENST00000598471 hCG_1642624A0A1W2PR95 340 aa17.83■□□□□ 0.44
UPF1-206ENST00000598471 TMEM88BA6NKF7 163 aa17.83■□□□□ 0.44
UPF1-206ENST00000598471 F13A1P00488 732 aa17.83■□□□□ 0.44
UPF1-206ENST00000598471 SLC16A2P36021 539 aa17.83■□□□□ 0.44
UPF1-206ENST00000598471 GUCY1B3Q02153 619 aa17.83■□□□□ 0.44
UPF1-206ENST00000598471 PPIL2Q13356 520 aa17.83■□□□□ 0.44
UPF1-206ENST00000598471 PKN1Q16512 942 aa17.83■□□□□ 0.44
UPF1-206ENST00000598471 KIAA1755Q5JYT7 1200 aa17.83■□□□□ 0.44
UPF1-206ENST00000598471 CCDC148Q8NFR7 591 aa17.83■□□□□ 0.44
UPF1-206ENST00000598471 CCDC12Q8WUD4 166 aaPredicted RBP17.83■□□□□ 0.44
UPF1-206ENST00000598471 SLC10A4Q96EP9 437 aa17.83■□□□□ 0.44
UPF1-206ENST00000598471 CLMNQ96JQ2 1002 aa17.83■□□□□ 0.44
UPF1-206ENST00000598471 AIFM3Q96NN9 605 aa17.83■□□□□ 0.44
UPF1-206ENST00000598471 PIGSQ96S52 555 aa17.83■□□□□ 0.44
UPF1-206ENST00000598471 CPVLQ9H3G5 476 aa17.83■□□□□ 0.44
UPF1-206ENST00000598471 BRMS1Q9HCU9 246 aa17.83■□□□□ 0.44
UPF1-206ENST00000598471 SH3GLB2Q9NR46 395 aa17.83■□□□□ 0.44
UPF1-206ENST00000598471 PNMA6FA0A0J9YX94 578 aa17.82■□□□□ 0.44
UPF1-206ENST00000598471 CXCL11O14625 94 aa17.82■□□□□ 0.44
UPF1-206ENST00000598471 VCAM1P19320 739 aa17.82■□□□□ 0.44
UPF1-206ENST00000598471 HMGCS2P54868 508 aa17.82■□□□□ 0.44
UPF1-206ENST00000598471 TRAF1Q13077 416 aa17.82■□□□□ 0.44
UPF1-206ENST00000598471 GNL2Q13823 731 aaKnown RBP17.82■□□□□ 0.44
UPF1-206ENST00000598471 SLC35G1Q2M3R5 365 aa17.82■□□□□ 0.44
UPF1-206ENST00000598471 SH3D19Q5HYK7 790 aa17.82■□□□□ 0.44
UPF1-206ENST00000598471 FOXD4L5Q5VV16 416 aaPredicted RBP17.82■□□□□ 0.44
UPF1-206ENST00000598471 KRT40Q6A162 431 aa17.82■□□□□ 0.44
UPF1-206ENST00000598471 MCTP1Q6DN14 999 aa17.82■□□□□ 0.44
UPF1-206ENST00000598471 HEATR3Q7Z4Q2 680 aa17.82■□□□□ 0.44
UPF1-206ENST00000598471 FOXD4L4Q8WXT5 416 aaPredicted RBP17.82■□□□□ 0.44
UPF1-206ENST00000598471 OTUD5Q96G74 571 aa17.82■□□□□ 0.44
UPF1-206ENST00000598471 ZSCAN16Q9H4T2 348 aaPredicted RBP17.82■□□□□ 0.44
UPF1-206ENST00000598471 JMJD4Q9H9V9 463 aa17.82■□□□□ 0.44
UPF1-206ENST00000598471 EMILIN3Q9NT22 766 aa17.82■□□□□ 0.44
UPF1-206ENST00000598471 ZDHHC9Q9Y397 364 aa17.82■□□□□ 0.44
UPF1-206ENST00000598471 MYH6P13533 1939 aa17.82■□□□□ 0.44
UPF1-206ENST00000598471 ZBTB5O15062 677 aa17.81■□□□□ 0.44
UPF1-206ENST00000598471 CALML3P27482 149 aa17.81■□□□□ 0.44
UPF1-206ENST00000598471 TNPO1Q92973 898 aaKnown RBP17.81■□□□□ 0.44
UPF1-206ENST00000598471 MTMR8Q96EF0 704 aa17.81■□□□□ 0.44
UPF1-206ENST00000598471 GBP4Q96PP9 640 aa17.81■□□□□ 0.44
UPF1-206ENST00000598471 TANGO6Q9C0B7 1094 aa17.81■□□□□ 0.44
UPF1-206ENST00000598471 CREBZFQ9NS37 354 aa17.81■□□□□ 0.44
UPF1-206ENST00000598471 BARHL2Q9NY43 387 aa17.81■□□□□ 0.44
UPF1-206ENST00000598471 VPS54Q9P1Q0 977 aa17.81■□□□□ 0.44
UPF1-206ENST00000598471 PHIPQ8WWQ0 1821 aa17.81■□□□□ 0.44
UPF1-206ENST00000598471 MMP1P03956 469 aa17.8■□□□□ 0.44
UPF1-206ENST00000598471 NLRP5P59047 1200 aa17.8■□□□□ 0.44
UPF1-206ENST00000598471 CDC37Q16543 378 aaPredicted RBP17.8■□□□□ 0.44
UPF1-206ENST00000598471 OTUD7BQ6GQQ9 843 aa17.8■□□□□ 0.44
UPF1-206ENST00000598471 PPP1R18Q6NYC8 613 aa17.8■□□□□ 0.44
UPF1-206ENST00000598471 DNAJC5GQ8N7S2 189 aa17.8■□□□□ 0.44
UPF1-206ENST00000598471 OPTNQ96CV9 577 aa17.8■□□□□ 0.44
UPF1-206ENST00000598471 SLF1Q9BQI6 1058 aa17.8■□□□□ 0.44
UPF1-206ENST00000598471 RPAP3Q9H6T3 665 aaPredicted RBP17.8■□□□□ 0.44
UPF1-206ENST00000598471 PRR12Q9ULL5 1215 aa17.8■□□□□ 0.44
UPF1-206ENST00000598471 FDX1P10109 184 aa17.79■□□□□ 0.44
UPF1-206ENST00000598471 NAPAP54920 295 aa17.79■□□□□ 0.44
UPF1-206ENST00000598471 WWC2Q6AWC2 1192 aa17.79■□□□□ 0.44
UPF1-206ENST00000598471 GALNT17Q6IS24 598 aa17.79■□□□□ 0.44
UPF1-206ENST00000598471 FERMT3Q86UX7 667 aa17.79■□□□□ 0.44
UPF1-206ENST00000598471 PRPF38AQ8NAV1 312 aaKnown RBP17.79■□□□□ 0.44
UPF1-206ENST00000598471 PROCA1Q8NCQ7 364 aaPredicted RBP17.79■□□□□ 0.44
UPF1-206ENST00000598471 CNKSR2Q8WXI2 1034 aa17.79■□□□□ 0.44
UPF1-206ENST00000598471 GPKOWQ92917 476 aaPredicted RBP eCLIP17.79■□□□□ 0.44
UPF1-206ENST00000598471 KIFC2Q96AC6 838 aa17.79■□□□□ 0.44
UPF1-206ENST00000598471 KCNH4Q9UQ05 1017 aa17.79■□□□□ 0.44
UPF1-206ENST00000598471 A0A0G2JLL6 359 aaPredicted RBP17.78■□□□□ 0.44
UPF1-206ENST00000598471 USP17L15C9J2P7 530 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 USP17L13C9JLJ4 530 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 USP17L11C9JVI0 530 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 USP17L18D6R9N7 530 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 USP17L22D6RA61 530 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 USP17L17D6RBQ6 530 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 USP17L19D6RCP7 530 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 USP17L20D6RJB6 530 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 STXBP3O00186 592 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 IRF6O14896 467 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 FLOT1O75955 427 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 KRT2P35908 639 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 USP17L24Q0WX57 530 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 RESTQ13127 1097 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 QRICH1Q2TAL8 776 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 BRAPQ7Z569 592 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 PRRT2Q7Z6L0 340 aaPredicted RBP17.78■□□□□ 0.44
UPF1-206ENST00000598471 PHF20Q9BVI0 1012 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 AMNQ9BXJ7 453 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 GJB4Q9NTQ9 266 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 KCNJ14Q9UNX9 436 aa17.78■□□□□ 0.44
UPF1-206ENST00000598471 CTDP1Q9Y5B0 961 aaPredicted RBP17.78■□□□□ 0.44
UPF1-206ENST00000598471 KIF23Q02241 960 aaPredicted RBP17.77■□□□□ 0.44
UPF1-206ENST00000598471 SNAPC2Q13487 334 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms