RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 SLC1A4P43007 532 aa20.94■□□□□ 0.94
SHKBP1-204ENST00000594862 STAT2P52630 851 aa20.94■□□□□ 0.94
SHKBP1-204ENST00000594862 KCTD2Q14681 263 aa20.94■□□□□ 0.94
SHKBP1-204ENST00000594862 RRP12Q5JTH9 1297 aaKnown RBP20.94■□□□□ 0.94
SHKBP1-204ENST00000594862 HABP4Q5JVS0 413 aaKnown RBP20.94■□□□□ 0.94
SHKBP1-204ENST00000594862 REPS2Q8NFH8 660 aa20.94■□□□□ 0.94
SHKBP1-204ENST00000594862 CHURC1Q8WUH1 139 aa20.94■□□□□ 0.94
SHKBP1-204ENST00000594862 ESR2Q92731 530 aa20.94■□□□□ 0.94
SHKBP1-204ENST00000594862 MSCO60682 206 aa20.93■□□□□ 0.94
SHKBP1-204ENST00000594862 PLA2G6O60733 806 aa20.93■□□□□ 0.94
SHKBP1-204ENST00000594862 HAND2P61296 217 aa20.93■□□□□ 0.94
SHKBP1-204ENST00000594862 CACNB2Q08289 660 aaPredicted RBP20.93■□□□□ 0.94
SHKBP1-204ENST00000594862 TRIM32Q13049 653 aa20.93■□□□□ 0.94
SHKBP1-204ENST00000594862 CCL14Q16627 93 aa20.93■□□□□ 0.94
SHKBP1-204ENST00000594862 IMMTQ16891 758 aaKnown RBP20.93■□□□□ 0.94
SHKBP1-204ENST00000594862 CCDC178Q5BJE1 867 aa20.93■□□□□ 0.94
SHKBP1-204ENST00000594862 UBE2Q1Q7Z7E8 422 aa20.93■□□□□ 0.94
SHKBP1-204ENST00000594862 TTC14Q96N46 770 aa20.93■□□□□ 0.94
SHKBP1-204ENST00000594862 IL17RBQ9NRM6 502 aa20.93■□□□□ 0.94
SHKBP1-204ENST00000594862 ISY1Q9ULR0 285 aaKnown RBP20.93■□□□□ 0.94
SHKBP1-204ENST00000594862 TOP1P11387 765 aaKnown RBP20.92■□□□□ 0.94
SHKBP1-204ENST00000594862 SNRNP48Q6IEG0 339 aaKnown RBP20.92■□□□□ 0.94
SHKBP1-204ENST00000594862 CENPQQ7L2Z9 268 aaPredicted RBP20.92■□□□□ 0.94
SHKBP1-204ENST00000594862 DCAF4Q8WV16 495 aa20.92■□□□□ 0.94
SHKBP1-204ENST00000594862 KIFC2Q96AC6 838 aa20.92■□□□□ 0.94
SHKBP1-204ENST00000594862 MMP19Q99542 508 aa20.92■□□□□ 0.94
SHKBP1-204ENST00000594862 SLC38A10Q9HBR0 1119 aa20.92■□□□□ 0.94
SHKBP1-204ENST00000594862 FBXO40Q9UH90 709 aa20.92■□□□□ 0.94
SHKBP1-204ENST00000594862 IKQ13123 557 aaPredicted RBP20.91■□□□□ 0.94
SHKBP1-204ENST00000594862 RCSD1Q6JBY9 416 aa20.91■□□□□ 0.94
SHKBP1-204ENST00000594862 TBC1D10CQ8IV04 446 aa20.91■□□□□ 0.94
SHKBP1-204ENST00000594862 INCENPQ9NQS7 918 aa20.91■□□□□ 0.94
SHKBP1-204ENST00000594862 DIS3Q9Y2L1 958 aaKnown RBP20.91■□□□□ 0.94
SHKBP1-204ENST00000594862 TMEM232C9JQI7 657 aa20.9■□□□□ 0.94
SHKBP1-204ENST00000594862 NMT2O60551 498 aa20.9■□□□□ 0.94
SHKBP1-204ENST00000594862 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.9■□□□□ 0.94
SHKBP1-204ENST00000594862 IQCA1Q86XH1 822 aa20.9■□□□□ 0.94
SHKBP1-204ENST00000594862 NPLOC4Q8TAT6 608 aa20.9■□□□□ 0.94
SHKBP1-204ENST00000594862 NBPF3Q9H094 633 aa20.9■□□□□ 0.94
SHKBP1-204ENST00000594862 CNNM2Q9H8M5 875 aa20.9■□□□□ 0.94
SHKBP1-204ENST00000594862 NRBP1Q9UHY1 535 aa20.9■□□□□ 0.94
SHKBP1-204ENST00000594862 OGDHLQ9ULD0 1010 aa20.9■□□□□ 0.94
SHKBP1-204ENST00000594862 TACC3Q9Y6A5 838 aa20.9■□□□□ 0.94
SHKBP1-204ENST00000594862 MCCP23508 829 aa20.89■□□□□ 0.93
SHKBP1-204ENST00000594862 NECAB2Q7Z6G3 386 aa20.89■□□□□ 0.93
SHKBP1-204ENST00000594862 CHST13Q8NET6 341 aa20.89■□□□□ 0.93
SHKBP1-204ENST00000594862 KRT23Q9C075 422 aa20.89■□□□□ 0.93
SHKBP1-204ENST00000594862 IGHA2P01877 340 aa20.88■□□□□ 0.93
SHKBP1-204ENST00000594862 CHMLP26374 656 aa20.88■□□□□ 0.93
SHKBP1-204ENST00000594862 CCDC96Q2M329 555 aa20.88■□□□□ 0.93
SHKBP1-204ENST00000594862 DGKHQ86XP1 1220 aa20.88■□□□□ 0.93
SHKBP1-204ENST00000594862 MAML3Q96JK9 1138 aa20.88■□□□□ 0.93
SHKBP1-204ENST00000594862 FLRT1Q9NZU1 646 aa20.88■□□□□ 0.93
SHKBP1-204ENST00000594862 PNMA2Q9UL42 364 aa20.88■□□□□ 0.93
SHKBP1-204ENST00000594862 SZT2Q5T011 3432 aa20.87■□□□□ 0.93
SHKBP1-204ENST00000594862 NEDD4P46934 1319 aa20.87■□□□□ 0.93
SHKBP1-204ENST00000594862 COBLO75128 1261 aa20.87■□□□□ 0.93
SHKBP1-204ENST00000594862 CCND3P30281 292 aaPredicted RBP20.87■□□□□ 0.93
SHKBP1-204ENST00000594862 TKFCQ3LXA3 575 aa20.87■□□□□ 0.93
SHKBP1-204ENST00000594862 CPXCR1Q8N123 301 aa20.87■□□□□ 0.93
SHKBP1-204ENST00000594862 MSL3Q8N5Y2 521 aaKnown RBP20.87■□□□□ 0.93
SHKBP1-204ENST00000594862 TMEM47Q9BQJ4 181 aa20.87■□□□□ 0.93
SHKBP1-204ENST00000594862 PLXNA1Q9UIW2 1896 aa20.87■□□□□ 0.93
SHKBP1-204ENST00000594862 FRMPD3Q5JV73 1810 aa20.86■□□□□ 0.93
SHKBP1-204ENST00000594862 CYBAP13498 195 aa20.86■□□□□ 0.93
SHKBP1-204ENST00000594862 CYP2C19P33261 490 aa20.86■□□□□ 0.93
SHKBP1-204ENST00000594862 DDX11Q96FC9 970 aa20.86■□□□□ 0.93
SHKBP1-204ENST00000594862 RAVER2Q9HCJ3 691 aaKnown RBP20.86■□□□□ 0.93
SHKBP1-204ENST00000594862 DDX20Q9UHI6 824 aaKnown RBP20.86■□□□□ 0.93
SHKBP1-204ENST00000594862 NR2E3Q9Y5X4 410 aa20.86■□□□□ 0.93
SHKBP1-204ENST00000594862 ZNFX1Q9P2E3 1918 aaKnown RBP20.86■□□□□ 0.93
SHKBP1-204ENST00000594862 TRIOBPQ9H2D6 2365 aa20.86■□□□□ 0.93
SHKBP1-204ENST00000594862 CNGA1P29973 690 aa20.85■□□□□ 0.93
SHKBP1-204ENST00000594862 ZNF792Q3KQV3 632 aa20.85■□□□□ 0.93
SHKBP1-204ENST00000594862 KCTD1Q719H9 257 aa20.85■□□□□ 0.93
SHKBP1-204ENST00000594862 DPF3Q92784 378 aa20.85■□□□□ 0.93
SHKBP1-204ENST00000594862 U3KPZ7 1027 aaPredicted RBP20.85■□□□□ 0.93
SHKBP1-204ENST00000594862 KDM4AO75164 1064 aa20.84■□□□□ 0.93
SHKBP1-204ENST00000594862 TRDNQ13061 729 aa20.84■□□□□ 0.93
SHKBP1-204ENST00000594862 BTNL9Q6UXG8 535 aa20.84■□□□□ 0.93
SHKBP1-204ENST00000594862 ZNF467Q7Z7K2 595 aaPredicted RBP20.84■□□□□ 0.93
SHKBP1-204ENST00000594862 ANKRD35Q8N283 1001 aa20.84■□□□□ 0.93
SHKBP1-204ENST00000594862 PAWRQ96IZ0 340 aaKnown RBP20.84■□□□□ 0.93
SHKBP1-204ENST00000594862 TINF2Q9BSI4 451 aa20.84■□□□□ 0.93
SHKBP1-204ENST00000594862 ACAD9Q9H845 621 aa20.84■□□□□ 0.93
SHKBP1-204ENST00000594862 PRR12Q9ULL5 1215 aa20.84■□□□□ 0.93
SHKBP1-204ENST00000594862 RANBP2P49792 3224 aaKnown RBP20.83■□□□□ 0.93
SHKBP1-204ENST00000594862 SGSM2O43147 1006 aa20.83■□□□□ 0.93
SHKBP1-204ENST00000594862 SEPT4O43236 478 aa20.83■□□□□ 0.93
SHKBP1-204ENST00000594862 PGK2P07205 417 aa20.83■□□□□ 0.93
SHKBP1-204ENST00000594862 PDHBP11177 359 aa20.83■□□□□ 0.93
SHKBP1-204ENST00000594862 FXR1P51114 621 aaKnown RBP eCLIP20.83■□□□□ 0.93
SHKBP1-204ENST00000594862 GPATCH4Q5T3I0 446 aaKnown RBP20.83■□□□□ 0.93
SHKBP1-204ENST00000594862 LHX8Q68G74 356 aa20.83■□□□□ 0.93
SHKBP1-204ENST00000594862 ANKS1AQ92625 1134 aa20.83■□□□□ 0.93
SHKBP1-204ENST00000594862 UBAC1Q9BSL1 405 aa20.83■□□□□ 0.93
SHKBP1-204ENST00000594862 C11orf49Q9H6J7 331 aa20.83■□□□□ 0.93
SHKBP1-204ENST00000594862 RIPK3Q9Y572 518 aa20.83■□□□□ 0.93
SHKBP1-204ENST00000594862 PFASO15067 1338 aa20.82■□□□□ 0.92
SHKBP1-204ENST00000594862 SYNGAP1Q96PV0 1343 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms