RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 TTC41PQ6P2S7 1318 aa22.69■■□□□ 1.22
VPS35-202ENST00000561713 PGK1P00558 417 aa22.69■■□□□ 1.22
VPS35-202ENST00000561713 APPP05067 770 aa22.69■■□□□ 1.22
VPS35-202ENST00000561713 RARBP10826 455 aa22.69■■□□□ 1.22
VPS35-202ENST00000561713 SBK1Q52WX2 424 aa22.69■■□□□ 1.22
VPS35-202ENST00000561713 MAFAQ8NHW3 353 aaPredicted RBP22.69■■□□□ 1.22
VPS35-202ENST00000561713 MYLIPQ8WY64 445 aa22.69■■□□□ 1.22
VPS35-202ENST00000561713 TINF2Q9BSI4 451 aa22.69■■□□□ 1.22
VPS35-202ENST00000561713 ZFYP08048 801 aaPredicted RBP22.68■■□□□ 1.22
VPS35-202ENST00000561713 MX1P20591 662 aa22.68■■□□□ 1.22
VPS35-202ENST00000561713 EPHB4P54760 987 aa22.68■■□□□ 1.22
VPS35-202ENST00000561713 ZNF792Q3KQV3 632 aa22.68■■□□□ 1.22
VPS35-202ENST00000561713 RIOX2Q8IUF8 465 aa22.68■■□□□ 1.22
VPS35-202ENST00000561713 MKNK2Q9HBH9 465 aa22.68■■□□□ 1.22
VPS35-202ENST00000561713 GOPCQ9HD26 462 aa22.68■■□□□ 1.22
VPS35-202ENST00000561713 NRBP1Q9UHY1 535 aa22.68■■□□□ 1.22
VPS35-202ENST00000561713 TACC3Q9Y6A5 838 aa22.68■■□□□ 1.22
VPS35-202ENST00000561713 VWA5AO00534 786 aa22.67■■□□□ 1.22
VPS35-202ENST00000561713 CLTBP09497 229 aa22.67■■□□□ 1.22
VPS35-202ENST00000561713 STAT3P40763 770 aa22.67■■□□□ 1.22
VPS35-202ENST00000561713 KCTD2Q14681 263 aa22.67■■□□□ 1.22
VPS35-202ENST00000561713 CCDC129Q6ZRS4 1044 aa22.67■■□□□ 1.22
VPS35-202ENST00000561713 RNF180Q86T96 592 aa22.67■■□□□ 1.22
VPS35-202ENST00000561713 LENG1Q96BZ8 264 aaPredicted RBP22.67■■□□□ 1.22
VPS35-202ENST00000561713 SALL3Q9BXA9 1300 aa22.66■■□□□ 1.22
VPS35-202ENST00000561713 A0A1W2PQ45 241 aaPredicted RBP22.66■■□□□ 1.22
VPS35-202ENST00000561713 A0A1W2PQY0 241 aa22.66■■□□□ 1.22
VPS35-202ENST00000561713 ERC2O15083 957 aa22.66■■□□□ 1.22
VPS35-202ENST00000561713 ZNF865P0CJ78 1059 aaPredicted RBP22.66■■□□□ 1.22
VPS35-202ENST00000561713 GIMAP6Q6P9H5 292 aa22.66■■□□□ 1.22
VPS35-202ENST00000561713 PPP1R9AQ9ULJ8 1098 aa22.66■■□□□ 1.22
VPS35-202ENST00000561713 PQBP1O60828 265 aaKnown RBP22.65■■□□□ 1.22
VPS35-202ENST00000561713 NDUFB10O96000 172 aa22.65■■□□□ 1.22
VPS35-202ENST00000561713 LRRC47Q8N1G4 583 aaKnown RBP22.65■■□□□ 1.22
VPS35-202ENST00000561713 REPS2Q8NFH8 660 aa22.65■■□□□ 1.22
VPS35-202ENST00000561713 RNPC3Q96LT9 517 aaKnown RBP22.65■■□□□ 1.22
VPS35-202ENST00000561713 ZNF214Q9UL59 606 aaPredicted RBP22.65■■□□□ 1.22
VPS35-202ENST00000561713 DIS3Q9Y2L1 958 aaKnown RBP22.65■■□□□ 1.22
VPS35-202ENST00000561713 KIAA0355O15063 1070 aa22.64■■□□□ 1.21
VPS35-202ENST00000561713 GNAT2P19087 354 aa22.64■■□□□ 1.21
VPS35-202ENST00000561713 ZMYM1Q5SVZ6 1142 aa22.64■■□□□ 1.21
VPS35-202ENST00000561713 IFNL3Q8IZI9 196 aa22.64■■□□□ 1.21
VPS35-202ENST00000561713 IGKV6D-41A0A0C4DH26 115 aa22.63■■□□□ 1.21
VPS35-202ENST00000561713 AKR1A1P14550 325 aa22.63■■□□□ 1.21
VPS35-202ENST00000561713 FOSL2P15408 326 aa22.63■■□□□ 1.21
VPS35-202ENST00000561713 RAG1P15918 1043 aa22.63■■□□□ 1.21
VPS35-202ENST00000561713 ANKRD45Q5TZF3 282 aa22.63■■□□□ 1.21
VPS35-202ENST00000561713 CHMP4CQ96CF2 233 aa22.63■■□□□ 1.21
VPS35-202ENST00000561713 CEP95Q96GE4 821 aa22.63■■□□□ 1.21
VPS35-202ENST00000561713 TMEM39AQ9NV64 488 aa22.63■■□□□ 1.21
VPS35-202ENST00000561713 MUC3AQ02505 3323 aa22.63■■□□□ 1.21
VPS35-202ENST00000561713 ADAMTS4O75173 837 aa22.62■■□□□ 1.21
VPS35-202ENST00000561713 SLF1Q9BQI6 1058 aa22.62■■□□□ 1.21
VPS35-202ENST00000561713 NAPBQ9H115 298 aa22.62■■□□□ 1.21
VPS35-202ENST00000561713 CNPY2Q9Y2B0 182 aa22.62■■□□□ 1.21
VPS35-202ENST00000561713 PLIN4Q96Q06 1357 aa22.62■■□□□ 1.21
VPS35-202ENST00000561713 FOXP2O15409 715 aa22.61■■□□□ 1.21
VPS35-202ENST00000561713 FPGSQ05932 587 aa22.61■■□□□ 1.21
VPS35-202ENST00000561713 FAAP100Q0VG06 881 aa22.61■■□□□ 1.21
VPS35-202ENST00000561713 LRRFIP1Q32MZ4 808 aaKnown RBP22.61■■□□□ 1.21
VPS35-202ENST00000561713 NYAP2Q9P242 653 aa22.61■■□□□ 1.21
VPS35-202ENST00000561713 CLIP2Q9UDT6 1046 aa22.61■■□□□ 1.21
VPS35-202ENST00000561713 SYNRGQ9UMZ2 1314 aa22.6■■□□□ 1.21
VPS35-202ENST00000561713 PATL2C9JE40 543 aaKnown RBP22.6■■□□□ 1.21
VPS35-202ENST00000561713 F5H6K3 240 aa22.6■■□□□ 1.21
VPS35-202ENST00000561713 COPB2P35606 906 aa22.6■■□□□ 1.21
VPS35-202ENST00000561713 SLC4A3P48751 1232 aa22.6■■□□□ 1.21
VPS35-202ENST00000561713 ACLYP53396 1101 aa22.6■■□□□ 1.21
VPS35-202ENST00000561713 KLRC3Q07444 240 aa22.6■■□□□ 1.21
VPS35-202ENST00000561713 PPARAQ07869 468 aa22.6■■□□□ 1.21
VPS35-202ENST00000561713 ANKRD33Q7Z3H0 272 aa22.6■■□□□ 1.21
VPS35-202ENST00000561713 TSEN34Q9BSV6 310 aaKnown RBP22.6■■□□□ 1.21
VPS35-202ENST00000561713 NACAP1Q9BZK3 213 aa22.6■■□□□ 1.21
VPS35-202ENST00000561713 RIPK3Q9Y572 518 aa22.6■■□□□ 1.21
VPS35-202ENST00000561713 SNAI1O95863 264 aaPredicted RBP22.59■■□□□ 1.21
VPS35-202ENST00000561713 VPS53Q5VIR6 699 aa22.59■■□□□ 1.21
VPS35-202ENST00000561713 SNRNP48Q6IEG0 339 aaKnown RBP22.59■■□□□ 1.21
VPS35-202ENST00000561713 RASGRP2Q7LDG7 609 aa22.59■■□□□ 1.21
VPS35-202ENST00000561713 ZNF444Q8N0Y2 327 aaPredicted RBP22.59■■□□□ 1.21
VPS35-202ENST00000561713 TOX2Q96NM4 488 aa22.59■■□□□ 1.21
VPS35-202ENST00000561713 STARD7Q9NQZ5 370 aa22.59■■□□□ 1.21
VPS35-202ENST00000561713 ZBTB47Q9UFB7 747 aaPredicted RBP22.59■■□□□ 1.21
VPS35-202ENST00000561713 ISY1Q9ULR0 285 aaKnown RBP22.59■■□□□ 1.21
VPS35-202ENST00000561713 DCDC2CA8MYV0 355 aa22.58■■□□□ 1.21
VPS35-202ENST00000561713 CTDSPL2Q05D32 466 aa22.58■■□□□ 1.21
VPS35-202ENST00000561713 GRIN2CQ14957 1233 aa22.58■■□□□ 1.21
VPS35-202ENST00000561713 KCNA10Q16322 511 aa22.58■■□□□ 1.21
VPS35-202ENST00000561713 KLHDC9Q8NEP7 349 aa22.58■■□□□ 1.21
VPS35-202ENST00000561713 KIFC2Q96AC6 838 aa22.58■■□□□ 1.21
VPS35-202ENST00000561713 TEX13BQ9BXU2 312 aa22.58■■□□□ 1.21
VPS35-202ENST00000561713 INCENPQ9NQS7 918 aa22.58■■□□□ 1.21
VPS35-202ENST00000561713 MTMR4Q9NYA4 1195 aa22.58■■□□□ 1.21
VPS35-202ENST00000561713 FAM184BQ9ULE4 1060 aa22.58■■□□□ 1.21
VPS35-202ENST00000561713 LRRC37A2A6NM11 1700 aa22.57■■□□□ 1.2
VPS35-202ENST00000561713 LAMA4Q16363 1823 aa22.57■■□□□ 1.2
VPS35-202ENST00000561713 LCTP09848 1927 aa22.57■■□□□ 1.2
VPS35-202ENST00000561713 TMEM265A0A087WTH1 108 aa22.57■■□□□ 1.2
VPS35-202ENST00000561713 MYADML2A6NDP7 307 aa22.57■■□□□ 1.2
VPS35-202ENST00000561713 TSPY3P0CV98 308 aa22.57■■□□□ 1.2
VPS35-202ENST00000561713 TSPY8P0CW00 308 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms