RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 LBHD1Q9BQE6 289 aaPredicted RBP9.26□□□□□ -0.93
CD44-211ENST00000442151 DOCK3Q8IZD9 2030 aa9.25□□□□□ -0.93
CD44-211ENST00000442151 GSG1L2A8MUP6 293 aa9.25□□□□□ -0.93
CD44-211ENST00000442151 DNM1LO00429 736 aa9.25□□□□□ -0.93
CD44-211ENST00000442151 ADORA2AP29274 412 aa9.25□□□□□ -0.93
CD44-211ENST00000442151 TRIM32Q13049 653 aa9.25□□□□□ -0.93
CD44-211ENST00000442151 C20orf194Q5TEA3 1177 aa9.25□□□□□ -0.93
CD44-211ENST00000442151 C7orf61Q8IZ16 206 aa9.25□□□□□ -0.93
CD44-211ENST00000442151 SLC44A5Q8NCS7 719 aa9.25□□□□□ -0.93
CD44-211ENST00000442151 MKL1Q969V6 931 aa9.25□□□□□ -0.93
CD44-211ENST00000442151 FSD1Q9BTV5 496 aa9.25□□□□□ -0.93
CD44-211ENST00000442151 NAPBQ9H115 298 aa9.25□□□□□ -0.93
CD44-211ENST00000442151 RBM27Q9P2N5 1060 aaKnown RBP9.25□□□□□ -0.93
CD44-211ENST00000442151 FBXO40Q9UH90 709 aa9.25□□□□□ -0.93
CD44-211ENST00000442151 FEM1BQ9UK73 627 aa9.25□□□□□ -0.93
CD44-211ENST00000442151 PPP1R9AQ9ULJ8 1098 aa9.25□□□□□ -0.93
CD44-211ENST00000442151 ADAMTS5Q9UNA0 930 aa9.25□□□□□ -0.93
CD44-211ENST00000442151 SEPT4O43236 478 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 GPAA1O43292 621 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 TTLL1O95922 423 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 CCND3P30281 292 aaPredicted RBP9.24□□□□□ -0.93
CD44-211ENST00000442151 NT5C2P49902 561 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 MFAP1P55081 439 aaKnown RBP9.24□□□□□ -0.93
CD44-211ENST00000442151 CCL14Q16627 93 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 IFNL3Q8IZI9 196 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 CHURC1Q8WUH1 139 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 EVI5LQ96CN4 794 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 DDX11Q96FC9 970 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 SLF1Q9BQI6 1058 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 RWDD1Q9H446 243 aaPredicted RBP9.24□□□□□ -0.93
CD44-211ENST00000442151 PNMA2Q9UL42 364 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 F5H6K3 240 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 TSPY3P0CV98 308 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 TSPY8P0CW00 308 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 MX1P20591 662 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 KLRC3Q07444 240 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 ANKRD45Q5TZF3 282 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 THSD4Q6ZMP0 1018 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 FAM160B2Q86V87 743 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 SIAH1Q8IUQ4 282 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 SPICE1Q8N0Z3 855 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 NPLOC4Q8TAT6 608 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 OSBP2Q969R2 916 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 ATG4CQ96DT6 458 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 SENP6Q9GZR1 1112 aaPredicted RBP9.24□□□□□ -0.93
CD44-211ENST00000442151 CLIP2Q9UDT6 1046 aa9.24□□□□□ -0.93
CD44-211ENST00000442151 VWA5AO00534 786 aa9.23□□□□□ -0.93
CD44-211ENST00000442151 RARBP10826 455 aa9.23□□□□□ -0.93
CD44-211ENST00000442151 COL6A1P12109 1028 aa9.23□□□□□ -0.93
CD44-211ENST00000442151 OAZ1P54368 228 aa9.23□□□□□ -0.93
CD44-211ENST00000442151 RRP1P56182 461 aaKnown RBP9.23□□□□□ -0.93
CD44-211ENST00000442151 TMEM132BQ14DG7 1078 aa9.23□□□□□ -0.93
CD44-211ENST00000442151 TKFCQ3LXA3 575 aa9.23□□□□□ -0.93
CD44-211ENST00000442151 RNF180Q86T96 592 aa9.23□□□□□ -0.93
CD44-211ENST00000442151 CHST13Q8NET6 341 aa9.23□□□□□ -0.93
CD44-211ENST00000442151 NEDD1Q8NHV4 660 aa9.23□□□□□ -0.93
CD44-211ENST00000442151 TEX13BQ9BXU2 312 aa9.23□□□□□ -0.93
CD44-211ENST00000442151 UBE2OQ9C0C9 1292 aaKnown RBP9.23□□□□□ -0.93
CD44-211ENST00000442151 SPC25Q9HBM1 224 aa9.23□□□□□ -0.93
CD44-211ENST00000442151 HELLSQ9NRZ9 838 aa9.23□□□□□ -0.93
CD44-211ENST00000442151 STAP2Q9UGK3 403 aa9.23□□□□□ -0.93
CD44-211ENST00000442151 CNPY2Q9Y2B0 182 aa9.23□□□□□ -0.93
CD44-211ENST00000442151 HTTP42858 3142 aa9.23□□□□□ -0.93
CD44-211ENST00000442151 ROBO3Q96MS0 1386 aa9.22□□□□□ -0.93
CD44-211ENST00000442151 CYP2D7A0A087X1C5 515 aa9.22□□□□□ -0.93
CD44-211ENST00000442151 ATP2A1O14983 1001 aa9.22□□□□□ -0.93
CD44-211ENST00000442151 RASA1P20936 1047 aa9.22□□□□□ -0.93
CD44-211ENST00000442151 CYP2C19P33261 490 aa9.22□□□□□ -0.93
CD44-211ENST00000442151 HDAC1Q13547 482 aaPredicted RBP9.22□□□□□ -0.93
CD44-211ENST00000442151 ZMYM1Q5SVZ6 1142 aa9.22□□□□□ -0.93
CD44-211ENST00000442151 FAM83BQ5T0W9 1011 aa9.22□□□□□ -0.93
CD44-211ENST00000442151 GMCL1P1Q8NEA9 526 aa9.22□□□□□ -0.93
CD44-211ENST00000442151 DIS3LQ8TF46 1054 aaKnown RBP9.22□□□□□ -0.93
CD44-211ENST00000442151 MAML3Q96JK9 1138 aa9.22□□□□□ -0.93
CD44-211ENST00000442151 MTMR4Q9NYA4 1195 aa9.22□□□□□ -0.93
CD44-211ENST00000442151 MYH7P12883 1935 aa9.22□□□□□ -0.93
CD44-211ENST00000442151 MYH8P13535 1937 aa9.22□□□□□ -0.93
CD44-211ENST00000442151 DDX60LQ5H9U9 1706 aaKnown RBP9.22□□□□□ -0.93
CD44-211ENST00000442151 PLXNB2O15031 1838 aa9.22□□□□□ -0.93
CD44-211ENST00000442151 LCE2BO14633 110 aa9.21□□□□□ -0.93
CD44-211ENST00000442151 PEX10O60683 326 aa9.21□□□□□ -0.93
CD44-211ENST00000442151 PCP11498 1178 aaKnown RBP9.21□□□□□ -0.93
CD44-211ENST00000442151 BMP3P12645 472 aa9.21□□□□□ -0.93
CD44-211ENST00000442151 CYBAP13498 195 aa9.21□□□□□ -0.93
CD44-211ENST00000442151 RCSD1Q6JBY9 416 aa9.21□□□□□ -0.93
CD44-211ENST00000442151 GDF15Q99988 308 aa9.21□□□□□ -0.93
CD44-211ENST00000442151 TINF2Q9BSI4 451 aa9.21□□□□□ -0.93
CD44-211ENST00000442151 TSEN34Q9BSV6 310 aaKnown RBP9.21□□□□□ -0.93
CD44-211ENST00000442151 PRO3102Q9H379 93 aa9.21□□□□□ -0.93
CD44-211ENST00000442151 FAM184BQ9ULE4 1060 aa9.21□□□□□ -0.93
CD44-211ENST00000442151 TSPY2A6NKD2 308 aa9.21□□□□□ -0.94
CD44-211ENST00000442151 PLA2G6O60733 806 aa9.21□□□□□ -0.94
CD44-211ENST00000442151 COBLO75128 1261 aa9.21□□□□□ -0.94
CD44-211ENST00000442151 NDUFB10O96000 172 aa9.21□□□□□ -0.94
CD44-211ENST00000442151 AKR1A1P14550 325 aa9.21□□□□□ -0.94
CD44-211ENST00000442151 TFAP4Q01664 338 aa9.21□□□□□ -0.94
CD44-211ENST00000442151 PPARAQ07869 468 aa9.21□□□□□ -0.94
CD44-211ENST00000442151 IKQ13123 557 aaPredicted RBP9.21□□□□□ -0.94
CD44-211ENST00000442151 ALX1Q15699 326 aa9.21□□□□□ -0.94
CD44-211ENST00000442151 SLFNL1Q499Z3 407 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms