RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 TXLNAP40222 546 aa22.01■■□□□ 1.11
PCF11-203ENST00000530304 PAK1Q13153 545 aa22.01■■□□□ 1.11
PCF11-203ENST00000530304 CRNKL1Q9BZJ0 848 aaKnown RBP22.01■■□□□ 1.11
PCF11-203ENST00000530304 VPS16Q9H269 839 aa22.01■■□□□ 1.11
PCF11-203ENST00000530304 ZSWIM4Q9H7M6 989 aa22.01■■□□□ 1.11
PCF11-203ENST00000530304 ARFGAP3Q9NP61 516 aa22.01■■□□□ 1.11
PCF11-203ENST00000530304 MYH13Q9UKX3 1938 aa22.01■■□□□ 1.11
PCF11-203ENST00000530304 COL16A1Q07092 1604 aaPredicted RBP22.01■■□□□ 1.11
PCF11-203ENST00000530304 CYP2D6P10635 497 aa22.01■■□□□ 1.11
PCF11-203ENST00000530304 ZNF569Q5MCW4 686 aa22.01■■□□□ 1.11
PCF11-203ENST00000530304 UBXN6Q9BZV1 441 aa22.01■■□□□ 1.11
PCF11-203ENST00000530304 SCN7AQ01118 1682 aa22.01■■□□□ 1.11
PCF11-203ENST00000530304 ZNF658Q5TYW1 1059 aaPredicted RBP22■■□□□ 1.11
PCF11-203ENST00000530304 SRGAP1Q7Z6B7 1085 aa22■■□□□ 1.11
PCF11-203ENST00000530304 TSPY2A6NKD2 308 aa22■■□□□ 1.11
PCF11-203ENST00000530304 CHMP4BP1P59074 171 aa22■■□□□ 1.11
PCF11-203ENST00000530304 NELFBQ8WX92 580 aa22■■□□□ 1.11
PCF11-203ENST00000530304 ATP8A2Q9NTI2 1148 aa22■■□□□ 1.11
PCF11-203ENST00000530304 ABHD10Q9NUJ1 306 aa22■■□□□ 1.11
PCF11-203ENST00000530304 CDC23Q9UJX2 597 aa22■■□□□ 1.11
PCF11-203ENST00000530304 COL22A1Q8NFW1 1626 aaPredicted RBP22■■□□□ 1.11
PCF11-203ENST00000530304 CDC25AP30304 524 aa21.99■■□□□ 1.11
PCF11-203ENST00000530304 COPB1P53618 953 aaKnown RBP21.99■■□□□ 1.11
PCF11-203ENST00000530304 TCP11X2Q5H9J9 407 aa21.99■■□□□ 1.11
PCF11-203ENST00000530304 TMTC1Q8IUR5 882 aa21.99■■□□□ 1.11
PCF11-203ENST00000530304 ACRBPQ8NEB7 543 aa21.99■■□□□ 1.11
PCF11-203ENST00000530304 ERICH4A6NGS2 130 aa21.99■■□□□ 1.11
PCF11-203ENST00000530304 RNF225M0QZC1 329 aaPredicted RBP21.99■■□□□ 1.11
PCF11-203ENST00000530304 POLR3GO15318 223 aaPredicted RBP21.99■■□□□ 1.11
PCF11-203ENST00000530304 RPN1P04843 607 aaKnown RBP21.99■■□□□ 1.11
PCF11-203ENST00000530304 ERVK-24P63145 666 aa21.99■■□□□ 1.11
PCF11-203ENST00000530304 SPAG1Q07617 926 aa21.99■■□□□ 1.11
PCF11-203ENST00000530304 TAF3Q5VWG9 929 aa21.99■■□□□ 1.11
PCF11-203ENST00000530304 ARL6IP4Q66PJ3 421 aaKnown RBP21.99■■□□□ 1.11
PCF11-203ENST00000530304 C4orf32Q8N8J7 132 aa21.99■■□□□ 1.11
PCF11-203ENST00000530304 TAB2Q9NYJ8 693 aa21.99■■□□□ 1.11
PCF11-203ENST00000530304 PUF60Q9UHX1 559 aaKnown RBP21.99■■□□□ 1.11
PCF11-203ENST00000530304 TTF2Q9UNY4 1162 aaKnown RBP21.99■■□□□ 1.11
PCF11-203ENST00000530304 SPATA31A1Q5TZJ5 1347 aa21.99■■□□□ 1.11
PCF11-203ENST00000530304 MYH8P13535 1937 aa21.99■■□□□ 1.11
PCF11-203ENST00000530304 KCNJ18B7U540 433 aa21.98■■□□□ 1.11
PCF11-203ENST00000530304 KCNJ12Q14500 433 aa21.98■■□□□ 1.11
PCF11-203ENST00000530304 RCSD1Q6JBY9 416 aa21.98■■□□□ 1.11
PCF11-203ENST00000530304 BICDL1Q6ZP65 573 aa21.98■■□□□ 1.11
PCF11-203ENST00000530304 NUP88Q99567 741 aaPredicted RBP21.98■■□□□ 1.11
PCF11-203ENST00000530304 RMND1Q9NWS8 449 aa21.98■■□□□ 1.11
PCF11-203ENST00000530304 MAPK8IP1Q9UQF2 711 aa21.98■■□□□ 1.11
PCF11-203ENST00000530304 PRDX5P30044 214 aa21.98■■□□□ 1.11
PCF11-203ENST00000530304 LONP1P36776 959 aaKnown RBP21.98■■□□□ 1.11
PCF11-203ENST00000530304 JAKMIP3Q5VZ66 844 aa21.98■■□□□ 1.11
PCF11-203ENST00000530304 TFCP2L1Q9NZI6 479 aa21.98■■□□□ 1.11
PCF11-203ENST00000530304 ARPP21Q9UBL0 812 aaPredicted RBP21.98■■□□□ 1.11
PCF11-203ENST00000530304 GDAQ9Y2T3 454 aa21.98■■□□□ 1.11
PCF11-203ENST00000530304 ADAMTS2O95450 1211 aa21.97■■□□□ 1.11
PCF11-203ENST00000530304 ABL1P00519 1130 aa21.97■■□□□ 1.11
PCF11-203ENST00000530304 GTF2E1P29083 439 aaPredicted RBP21.97■■□□□ 1.11
PCF11-203ENST00000530304 KIF5BP33176 963 aa21.97■■□□□ 1.11
PCF11-203ENST00000530304 CYP2C19P33261 490 aa21.97■■□□□ 1.11
PCF11-203ENST00000530304 BLIDQ8IZY5 108 aa21.97■■□□□ 1.11
PCF11-203ENST00000530304 CEP112Q8N8E3 955 aa21.97■■□□□ 1.11
PCF11-203ENST00000530304 ANKRD20A12PQ8NF67 263 aa21.97■■□□□ 1.11
PCF11-203ENST00000530304 FUT8Q9BYC5 575 aa21.97■■□□□ 1.11
PCF11-203ENST00000530304 CTAGE9A4FU28 777 aa21.97■■□□□ 1.11
PCF11-203ENST00000530304 CALML3P27482 149 aa21.97■■□□□ 1.11
PCF11-203ENST00000530304 PRCPP42785 496 aa21.97■■□□□ 1.11
PCF11-203ENST00000530304 SMC1AQ14683 1233 aaKnown RBP21.97■■□□□ 1.11
PCF11-203ENST00000530304 KIF4BQ2VIQ3 1234 aa21.97■■□□□ 1.11
PCF11-203ENST00000530304 SBK1Q52WX2 424 aa21.97■■□□□ 1.11
PCF11-203ENST00000530304 SLC35F6Q8N357 371 aa21.97■■□□□ 1.11
PCF11-203ENST00000530304 CCDC66A2RUB6 948 aa21.96■■□□□ 1.11
PCF11-203ENST00000530304 CCDC151A5D8V7 595 aa21.96■■□□□ 1.11
PCF11-203ENST00000530304 HIBADHP31937 336 aaKnown RBP21.96■■□□□ 1.11
PCF11-203ENST00000530304 CYP26C1Q6V0L0 522 aa21.96■■□□□ 1.11
PCF11-203ENST00000530304 THRAP3Q9Y2W1 955 aaKnown RBP21.96■■□□□ 1.11
PCF11-203ENST00000530304 FAM205AQ6ZU69 1335 aa21.96■■□□□ 1.11
PCF11-203ENST00000530304 STAT6P42226 847 aa21.96■■□□□ 1.11
PCF11-203ENST00000530304 SLC4A8Q2Y0W8 1093 aa21.96■■□□□ 1.11
PCF11-203ENST00000530304 GPKOWQ92917 476 aaPredicted RBP eCLIP21.96■■□□□ 1.11
PCF11-203ENST00000530304 TUBB2AQ13885 445 aa21.95■■□□□ 1.11
PCF11-203ENST00000530304 TRIM14Q14142 442 aa21.95■■□□□ 1.11
PCF11-203ENST00000530304 TUBB2BQ9BVA1 445 aa21.95■■□□□ 1.11
PCF11-203ENST00000530304 KAT14Q9H8E8 782 aa21.95■■□□□ 1.11
PCF11-203ENST00000530304 ZCCHC17Q9NP64 241 aaKnown RBP21.95■■□□□ 1.11
PCF11-203ENST00000530304 LAMB1P07942 1786 aa21.95■■□□□ 1.1
PCF11-203ENST00000530304 CASZ1Q86V15 1759 aa21.95■■□□□ 1.1
PCF11-203ENST00000530304 KCNQ2O43526 872 aa21.95■■□□□ 1.1
PCF11-203ENST00000530304 OAS2P29728 719 aaKnown RBP21.95■■□□□ 1.1
PCF11-203ENST00000530304 RPS8P62241 208 aaKnown RBP21.95■■□□□ 1.1
PCF11-203ENST00000530304 BRD3Q15059 726 aa21.95■■□□□ 1.1
PCF11-203ENST00000530304 LONRF2Q1L5Z9 754 aa21.95■■□□□ 1.1
PCF11-203ENST00000530304 ANKZF1Q9H8Y5 726 aa21.95■■□□□ 1.1
PCF11-203ENST00000530304 MCM9Q9NXL9 1143 aa21.95■■□□□ 1.1
PCF11-203ENST00000530304 ZKSCAN7Q9P0L1 754 aaPredicted RBP21.95■■□□□ 1.1
PCF11-203ENST00000530304 PCDHA4Q9UN74 947 aa21.95■■□□□ 1.1
PCF11-203ENST00000530304 PDS5AQ29RF7 1337 aaKnown RBP21.95■■□□□ 1.1
PCF11-203ENST00000530304 KRT9P35527 623 aa21.94■■□□□ 1.1
PCF11-203ENST00000530304 UBXN1Q04323 297 aa21.94■■□□□ 1.1
PCF11-203ENST00000530304 RASGRP4Q8TDF6 673 aa21.94■■□□□ 1.1
PCF11-203ENST00000530304 DISC1Q9NRI5 854 aa21.94■■□□□ 1.1
PCF11-203ENST00000530304 USP17L8P0C7I0 530 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms