RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 CHMP4CQ96CF2 233 aa15.08■□□□□ 0
SHMT2-227ENST00000557269 PTPN18Q99952 460 aa15.08■□□□□ 0
SHMT2-227ENST00000557269 TBC1D2Q9BYX2 928 aa15.08■□□□□ 0
SHMT2-227ENST00000557269 TM6SF1Q9BZW5 370 aa15.08■□□□□ 0
SHMT2-227ENST00000557269 LY9Q9HBG7 655 aa15.08■□□□□ 0
SHMT2-227ENST00000557269 ARHGEF10LQ9HCE6 1279 aa15.08■□□□□ 0
SHMT2-227ENST00000557269 HMGB1P09429 215 aaKnown RBP15.07■□□□□ 0
SHMT2-227ENST00000557269 TOP1P11387 765 aaKnown RBP15.07■□□□□ 0
SHMT2-227ENST00000557269 GTF2A2P52657 109 aa15.07■□□□□ 0
SHMT2-227ENST00000557269 TREML2Q5T2D2 321 aa15.07■□□□□ 0
SHMT2-227ENST00000557269 GPAT2Q6NUI2 795 aa15.07■□□□□ 0
SHMT2-227ENST00000557269 SPICE1Q8N0Z3 855 aa15.07■□□□□ 0
SHMT2-227ENST00000557269 DNAJC5GQ8N7S2 189 aa15.07■□□□□ 0
SHMT2-227ENST00000557269 TTC14Q96N46 770 aa15.07■□□□□ 0
SHMT2-227ENST00000557269 VCPKMTQ9H867 229 aa15.07■□□□□ 0
SHMT2-227ENST00000557269 UPF2Q9HAU5 1272 aaKnown RBP15.07■□□□□ 0
SHMT2-227ENST00000557269 PTPRFP10586 1907 aa15.06■□□□□ 0
SHMT2-227ENST00000557269 CCL15-CCL14A0A0B4J2E2 113 aa15.06■□□□□ 0
SHMT2-227ENST00000557269 TESPA1A2RU30 521 aaPredicted RBP15.06■□□□□ 0
SHMT2-227ENST00000557269 C19orf81C9J6K1 198 aa15.06■□□□□ 0
SHMT2-227ENST00000557269 F5H6K3 240 aa15.06■□□□□ 0
SHMT2-227ENST00000557269 NDUFB10O96000 172 aa15.06■□□□□ 0
SHMT2-227ENST00000557269 KLRC3Q07444 240 aa15.06■□□□□ 0
SHMT2-227ENST00000557269 NOGQ13253 232 aa15.06■□□□□ 0
SHMT2-227ENST00000557269 CCL15Q16663 113 aa15.06■□□□□ 0
SHMT2-227ENST00000557269 IFIT1BQ5T764 474 aaKnown RBP15.06■□□□□ 0
SHMT2-227ENST00000557269 USP17L2Q6R6M4 530 aa15.06■□□□□ 0
SHMT2-227ENST00000557269 GADL1Q6ZQY3 521 aa15.06■□□□□ 0
SHMT2-227ENST00000557269 Q6ZUG5 572 aa15.06■□□□□ 0
SHMT2-227ENST00000557269 TMEM87BQ96K49 555 aa15.06■□□□□ 0
SHMT2-227ENST00000557269 NUP88Q99567 741 aaPredicted RBP15.06■□□□□ 0
SHMT2-227ENST00000557269 MTMR7Q9Y216 660 aa15.06■□□□□ 0
SHMT2-227ENST00000557269 CYP46A1Q9Y6A2 500 aa15.06■□□□□ 0
SHMT2-227ENST00000557269 WDR19Q8NEZ3 1342 aa15.06■□□□□ 0
SHMT2-227ENST00000557269 MYH4Q9Y623 1939 aa15.05■□□□□ 0
SHMT2-227ENST00000557269 MANSC4A6NHS7 340 aaPredicted RBP15.05■□□□□ -0
SHMT2-227ENST00000557269 IGF2BP3O00425 579 aaKnown RBP eCLIP15.05■□□□□ -0
SHMT2-227ENST00000557269 RAD21O60216 631 aa15.05■□□□□ -0
SHMT2-227ENST00000557269 CETPP11597 493 aa15.05■□□□□ -0
SHMT2-227ENST00000557269 WTAPQ15007 396 aa15.05■□□□□ -0
SHMT2-227ENST00000557269 CCDC178Q5BJE1 867 aa15.05■□□□□ -0
SHMT2-227ENST00000557269 GMCL1P1Q8NEA9 526 aa15.05■□□□□ -0
SHMT2-227ENST00000557269 C12orf42Q96LP6 360 aa15.05■□□□□ -0
SHMT2-227ENST00000557269 LARP6Q9BRS8 491 aaKnown RBP15.05■□□□□ -0
SHMT2-227ENST00000557269 MTA3Q9BTC8 594 aa15.05■□□□□ -0
SHMT2-227ENST00000557269 BRPF3Q9ULD4 1205 aa15.05■□□□□ -0
SHMT2-227ENST00000557269 ERICH2A1L162 156 aa15.04■□□□□ -0
SHMT2-227ENST00000557269 BTBD19C9JJ37 291 aa15.04■□□□□ -0
SHMT2-227ENST00000557269 VCAM1P19320 739 aa15.04■□□□□ -0
SHMT2-227ENST00000557269 TM4SF4P48230 202 aa15.04■□□□□ -0
SHMT2-227ENST00000557269 TOB2Q14106 344 aaPredicted RBP15.04■□□□□ -0
SHMT2-227ENST00000557269 SART3Q15020 963 aaKnown RBP15.04■□□□□ -0
SHMT2-227ENST00000557269 PPP4R3BQ5MIZ7 849 aa15.04■□□□□ -0
SHMT2-227ENST00000557269 SLFN13Q68D06 897 aa15.04■□□□□ -0
SHMT2-227ENST00000557269 FAM43AQ8N2R8 423 aa15.04■□□□□ -0
SHMT2-227ENST00000557269 PNMA1Q8ND90 353 aa15.04■□□□□ -0
SHMT2-227ENST00000557269 MYL10Q9BUA6 226 aa15.04■□□□□ -0
SHMT2-227ENST00000557269 SH2D4AQ9H788 454 aa15.04■□□□□ -0
SHMT2-227ENST00000557269 KAT14Q9H8E8 782 aa15.04■□□□□ -0
SHMT2-227ENST00000557269 GOPCQ9HD26 462 aa15.04■□□□□ -0
SHMT2-227ENST00000557269 PDRG1Q9NUG6 133 aa15.04■□□□□ -0
SHMT2-227ENST00000557269 TMOD4Q9NZQ9 345 aa15.04■□□□□ -0
SHMT2-227ENST00000557269 SYNPO2Q9UMS6 1093 aa15.04■□□□□ -0
SHMT2-227ENST00000557269 LOC285556D6RIA3 1793 aa15.03■□□□□ -0
SHMT2-227ENST00000557269 LIFRP42702 1097 aa15.03■□□□□ -0
SHMT2-227ENST00000557269 NEK4P51957 841 aa15.03■□□□□ -0
SHMT2-227ENST00000557269 USP14P54578 494 aa15.03■□□□□ -0
SHMT2-227ENST00000557269 FAM83BQ5T0W9 1011 aa15.03■□□□□ -0
SHMT2-227ENST00000557269 FASTKD5Q7L8L6 764 aaKnown RBP15.03■□□□□ -0
SHMT2-227ENST00000557269 RAB11FIP4Q86YS3 637 aa15.03■□□□□ -0
SHMT2-227ENST00000557269 IFNL1Q8IU54 200 aa15.03■□□□□ -0
SHMT2-227ENST00000557269 PROCA1Q8NCQ7 364 aaPredicted RBP15.03■□□□□ -0
SHMT2-227ENST00000557269 BRF1Q92994 677 aa15.03■□□□□ -0
SHMT2-227ENST00000557269 AGXT2Q9BYV1 514 aa15.03■□□□□ -0
SHMT2-227ENST00000557269 RPAP3Q9H6T3 665 aaPredicted RBP15.03■□□□□ -0
SHMT2-227ENST00000557269 AGTPBP1Q9UPW5 1226 aa15.03■□□□□ -0
SHMT2-227ENST00000557269 THSD7BQ9C0I4 1608 aa15.03■□□□□ -0
SHMT2-227ENST00000557269 SNHG28P0DPA3 235 aa15.02■□□□□ -0
SHMT2-227ENST00000557269 PDHBP11177 359 aa15.02■□□□□ -0
SHMT2-227ENST00000557269 MAP2K2P36507 400 aa15.02■□□□□ -0
SHMT2-227ENST00000557269 APOBRQ0VD83 1088 aa15.02■□□□□ -0
SHMT2-227ENST00000557269 TROAPQ12815 778 aa15.02■□□□□ -0
SHMT2-227ENST00000557269 NFXL1Q6ZNB6 911 aa15.02■□□□□ -0
SHMT2-227ENST00000557269 ANKRD23Q86SG2 305 aa15.02■□□□□ -0
SHMT2-227ENST00000557269 SGMS1Q86VZ5 419 aa15.02■□□□□ -0
SHMT2-227ENST00000557269 FBXL16Q8N461 479 aa15.02■□□□□ -0
SHMT2-227ENST00000557269 LPAR1Q92633 364 aa15.02■□□□□ -0
SHMT2-227ENST00000557269 FRMPD2Q68DX3 1309 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-227ENST00000557269 CCDC69A6NI79 296 aa15.01□□□□□ -0.01
SHMT2-227ENST00000557269 PDHXO00330 501 aa15.01□□□□□ -0.01
SHMT2-227ENST00000557269 GOLGA8HP0CJ92 632 aa15.01□□□□□ -0.01
SHMT2-227ENST00000557269 RXRAP19793 462 aa15.01□□□□□ -0.01
SHMT2-227ENST00000557269 AK2P54819 239 aa15.01□□□□□ -0.01
SHMT2-227ENST00000557269 INHBEP58166 350 aa15.01□□□□□ -0.01
SHMT2-227ENST00000557269 FGD1P98174 961 aa15.01□□□□□ -0.01
SHMT2-227ENST00000557269 SREBF2Q12772 1141 aa15.01□□□□□ -0.01
SHMT2-227ENST00000557269 TTBK2Q6IQ55 1244 aa15.01□□□□□ -0.01
SHMT2-227ENST00000557269 POTEEQ6S8J3 1075 aa15.01□□□□□ -0.01
SHMT2-227ENST00000557269 KCTD1Q719H9 257 aa15.01□□□□□ -0.01
SHMT2-227ENST00000557269 ZNF654Q8IZM8 581 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms