RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 GDF11O95390 407 aa10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 CYP2B6P20813 491 aa10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 CAP2P40123 477 aa10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 IRF5Q13568 498 aa10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 MTMR2Q13614 643 aa10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 SPTY2D1Q68D10 685 aaPredicted RBP10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 ADGRA1Q86SQ6 560 aa10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 SLF2Q8IX21 1173 aa10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 ZNF280CQ8ND82 737 aa10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 PXYLP1Q8TE99 480 aa10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 FRAT1Q92837 279 aaPredicted RBP10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 COA7Q96BR5 231 aa10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 DNAJC18Q9H819 358 aa10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 AATFQ9NY61 560 aaKnown RBP eCLIP10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 SAP30BPQ9UHR5 308 aaKnown RBP10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 SLC45A1Q9Y2W3 748 aa10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 CDK5RAP2Q96SN8 1893 aa10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 COL2A1P02458 1487 aaPredicted RBP10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 DDX60LQ5H9U9 1706 aaKnown RBP10.67□□□□□ -0.7
SHKBP1-220ENST00000599716 PDS5AQ29RF7 1337 aaKnown RBP10.66□□□□□ -0.7
SHKBP1-220ENST00000599716 FAM110CQ1W6H9 321 aa10.66□□□□□ -0.7
SHKBP1-220ENST00000599716 PROCA1Q8NCQ7 364 aaPredicted RBP10.66□□□□□ -0.7
SHKBP1-220ENST00000599716 TGFBRAP1Q8WUH2 860 aa10.66□□□□□ -0.7
SHKBP1-220ENST00000599716 TRIB2Q92519 343 aa10.66□□□□□ -0.7
SHKBP1-220ENST00000599716 P2RX7Q99572 595 aaKnown RBP10.66□□□□□ -0.7
SHKBP1-220ENST00000599716 C1QTNF1Q9BXJ1 281 aa10.66□□□□□ -0.7
SHKBP1-220ENST00000599716 CRISPLD2Q9H0B8 497 aa10.66□□□□□ -0.7
SHKBP1-220ENST00000599716 C1orf115Q9H7X2 142 aa10.66□□□□□ -0.7
SHKBP1-220ENST00000599716 TXNRD2Q9NNW7 524 aa10.66□□□□□ -0.7
SHKBP1-220ENST00000599716 LRP2BPQ9P2M1 347 aa10.66□□□□□ -0.7
SHKBP1-220ENST00000599716 GJD2Q9UKL4 321 aa10.66□□□□□ -0.7
SHKBP1-220ENST00000599716 AKAP2Q9Y2D5 859 aa10.66□□□□□ -0.7
SHKBP1-220ENST00000599716 PKD1L2Q7Z442 2459 aa10.65□□□□□ -0.7
SHKBP1-220ENST00000599716 USP17L5A8MUK1 530 aa10.65□□□□□ -0.7
SHKBP1-220ENST00000599716 TBC1D12O60347 775 aa10.65□□□□□ -0.7
SHKBP1-220ENST00000599716 TRIM27P14373 513 aa10.65□□□□□ -0.7
SHKBP1-220ENST00000599716 ARID4AP29374 1257 aaPredicted RBP10.65□□□□□ -0.7
SHKBP1-220ENST00000599716 DYNLL1P63167 89 aaKnown RBP10.65□□□□□ -0.7
SHKBP1-220ENST00000599716 POTEEQ6S8J3 1075 aa10.65□□□□□ -0.7
SHKBP1-220ENST00000599716 DBNDD2Q9BQY9 259 aa10.65□□□□□ -0.7
SHKBP1-220ENST00000599716 PNMA3Q9UL41 463 aa10.65□□□□□ -0.7
SHKBP1-220ENST00000599716 PALD1Q9ULE6 856 aa10.65□□□□□ -0.7
SHKBP1-220ENST00000599716 NDUFB9Q9Y6M9 179 aa10.65□□□□□ -0.7
SHKBP1-220ENST00000599716 DNAH12Q6ZR08 3092 aa10.64□□□□□ -0.71
SHKBP1-220ENST00000599716 HMGCRP04035 888 aa10.64□□□□□ -0.71
SHKBP1-220ENST00000599716 GNAI3P08754 354 aa10.64□□□□□ -0.71
SHKBP1-220ENST00000599716 GSTO1P78417 241 aa10.64□□□□□ -0.71
SHKBP1-220ENST00000599716 MTX1Q13505 466 aa10.64□□□□□ -0.71
SHKBP1-220ENST00000599716 ZYXQ15942 572 aaKnown RBP10.64□□□□□ -0.71
SHKBP1-220ENST00000599716 CCL14Q16627 93 aa10.64□□□□□ -0.71
SHKBP1-220ENST00000599716 Q3C1V9 767 aa10.64□□□□□ -0.71
SHKBP1-220ENST00000599716 NECAB2Q7Z6G3 386 aa10.64□□□□□ -0.71
SHKBP1-220ENST00000599716 PAGR1Q9BTK6 254 aa10.64□□□□□ -0.71
SHKBP1-220ENST00000599716 PORCNQ9H237 461 aa10.64□□□□□ -0.71
SHKBP1-220ENST00000599716 TLR7Q9NYK1 1049 aaKnown RBP10.64□□□□□ -0.71
SHKBP1-220ENST00000599716 CHD8Q9HCK8 2581 aa10.64□□□□□ -0.71
SHKBP1-220ENST00000599716 FLT1P17948 1338 aa10.63□□□□□ -0.71
SHKBP1-220ENST00000599716 CFAP54Q96N23 3096 aa10.63□□□□□ -0.71
SHKBP1-220ENST00000599716 MAST2Q6P0Q8 1798 aa10.63□□□□□ -0.71
SHKBP1-220ENST00000599716 ABCB7O75027 752 aa10.63□□□□□ -0.71
SHKBP1-220ENST00000599716 GNAI2P04899 355 aa10.63□□□□□ -0.71
SHKBP1-220ENST00000599716 CYP2E1P05181 493 aaPredicted RBP10.63□□□□□ -0.71
SHKBP1-220ENST00000599716 LDHCP07864 332 aa10.63□□□□□ -0.71
SHKBP1-220ENST00000599716 PRKAR2AP13861 404 aaKnown RBP10.63□□□□□ -0.71
SHKBP1-220ENST00000599716 ZAP70P43403 619 aa10.63□□□□□ -0.71
SHKBP1-220ENST00000599716 IRX3P78415 501 aaPredicted RBP10.63□□□□□ -0.71
SHKBP1-220ENST00000599716 G3BP1Q13283 466 aaKnown RBP eCLIP10.63□□□□□ -0.71
SHKBP1-220ENST00000599716 SH3D19Q5HYK7 790 aa10.63□□□□□ -0.71
SHKBP1-220ENST00000599716 TTC39AQ5SRH9 613 aa10.63□□□□□ -0.71
SHKBP1-220ENST00000599716 NAA16Q6N069 864 aaPredicted RBP10.63□□□□□ -0.71
SHKBP1-220ENST00000599716 TMEM57Q8N5G2 664 aa10.63□□□□□ -0.71
SHKBP1-220ENST00000599716 PIH1D3Q9NQM4 214 aaKnown RBP10.63□□□□□ -0.71
SHKBP1-220ENST00000599716 FOCADQ5VW36 1801 aa10.63□□□□□ -0.71
SHKBP1-220ENST00000599716 PFASO15067 1338 aa10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 ZBTB22O15209 634 aa10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 FOSL2P15408 326 aa10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 CCND3P30281 292 aaPredicted RBP10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 GCLCP48506 637 aaPredicted RBP10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 BACE1P56817 501 aa10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 HERVK_113P62684 666 aa10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 EVX2Q03828 476 aa10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 TNNI3KQ59H18 835 aa10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 CRACR2BQ8N4Y2 399 aaPredicted RBP10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 MIGA1Q8NAN2 632 aa10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 HMX1Q9NP08 348 aaPredicted RBP10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 PI4KBQ9UBF8 816 aa10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 RBPJLQ9UBG7 517 aa10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 MORF4L1Q9UBU8 362 aa10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 ZBTB21Q9ULJ3 1066 aa10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 HDAC5Q9UQL6 1122 aa10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 FPGT-TNNI3KV9GXZ4 949 aa10.62□□□□□ -0.71
SHKBP1-220ENST00000599716 CT47B1P0C2W7 299 aaPredicted RBP10.61□□□□□ -0.71
SHKBP1-220ENST00000599716 CACNB2Q08289 660 aaPredicted RBP10.61□□□□□ -0.71
SHKBP1-220ENST00000599716 PABPC4Q13310 644 aaKnown RBP eCLIP10.61□□□□□ -0.71
SHKBP1-220ENST00000599716 OS9Q13438 667 aaPredicted RBP10.61□□□□□ -0.71
SHKBP1-220ENST00000599716 ATF7IPQ6VMQ6 1270 aa10.61□□□□□ -0.71
SHKBP1-220ENST00000599716 ARHGAP45Q92619 1136 aa10.61□□□□□ -0.71
SHKBP1-220ENST00000599716 NOL10Q9BSC4 688 aaKnown RBP10.61□□□□□ -0.71
SHKBP1-220ENST00000599716 WDR18Q9BV38 432 aa10.61□□□□□ -0.71
SHKBP1-220ENST00000599716 CCDC8Q9H0W5 538 aaPredicted RBP10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms