RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 HERC5Q9UII4 1024 aaKnown RBP14.27□□□□□ -0.13
LIG3-207ENST00000586119 NR2E3Q9Y5X4 410 aa14.27□□□□□ -0.13
LIG3-207ENST00000586119 FLT1P17948 1338 aa14.26□□□□□ -0.13
LIG3-207ENST00000586119 MYH1P12882 1939 aa14.26□□□□□ -0.13
LIG3-207ENST00000586119 BAG3O95817 575 aa14.26□□□□□ -0.13
LIG3-207ENST00000586119 RLBP1P12271 317 aa14.26□□□□□ -0.13
LIG3-207ENST00000586119 BACE1P56817 501 aa14.26□□□□□ -0.13
LIG3-207ENST00000586119 OS9Q13438 667 aaPredicted RBP14.26□□□□□ -0.13
LIG3-207ENST00000586119 CCDC158Q5M9N0 1113 aa14.26□□□□□ -0.13
LIG3-207ENST00000586119 ZKSCAN2Q63HK3 967 aa14.26□□□□□ -0.13
LIG3-207ENST00000586119 TRIB2Q92519 343 aa14.26□□□□□ -0.13
LIG3-207ENST00000586119 EAF2Q96CJ1 260 aaPredicted RBP14.26□□□□□ -0.13
LIG3-207ENST00000586119 NOL10Q9BSC4 688 aaKnown RBP14.26□□□□□ -0.13
LIG3-207ENST00000586119 AS3MTQ9HBK9 375 aa14.26□□□□□ -0.13
LIG3-207ENST00000586119 GPR108Q9NPR9 543 aa14.26□□□□□ -0.13
LIG3-207ENST00000586119 RBPJLQ9UBG7 517 aa14.26□□□□□ -0.13
LIG3-207ENST00000586119 DBNLQ9UJU6 430 aaKnown RBP14.26□□□□□ -0.13
LIG3-207ENST00000586119 CYP7A1P22680 504 aa14.25□□□□□ -0.13
LIG3-207ENST00000586119 PABPC4Q13310 644 aaKnown RBP eCLIP14.25□□□□□ -0.13
LIG3-207ENST00000586119 METTL16Q86W50 562 aaKnown RBP14.25□□□□□ -0.13
LIG3-207ENST00000586119 FOXP4Q8IVH2 680 aaPredicted RBP14.25□□□□□ -0.13
LIG3-207ENST00000586119 MIGA1Q8NAN2 632 aa14.25□□□□□ -0.13
LIG3-207ENST00000586119 DHX36Q9H2U1 1008 aaKnown RBP14.25□□□□□ -0.13
LIG3-207ENST00000586119 ANTXR1Q9H6X2 564 aa14.25□□□□□ -0.13
LIG3-207ENST00000586119 EMILIN3Q9NT22 766 aa14.25□□□□□ -0.13
LIG3-207ENST00000586119 MORF4L1Q9UBU8 362 aa14.25□□□□□ -0.13
LIG3-207ENST00000586119 HMGCRP04035 888 aa14.24□□□□□ -0.13
LIG3-207ENST00000586119 HOXA7P31268 230 aaPredicted RBP14.24□□□□□ -0.13
LIG3-207ENST00000586119 HERVK_113P62684 666 aa14.24□□□□□ -0.13
LIG3-207ENST00000586119 IRX3P78415 501 aaPredicted RBP14.24□□□□□ -0.13
LIG3-207ENST00000586119 NECAB2Q7Z6G3 386 aa14.24□□□□□ -0.13
LIG3-207ENST00000586119 CRACR2BQ8N4Y2 399 aaPredicted RBP14.24□□□□□ -0.13
LIG3-207ENST00000586119 LRCH3Q96II8 777 aa14.24□□□□□ -0.13
LIG3-207ENST00000586119 TBC1D2Q9BYX2 928 aa14.24□□□□□ -0.13
LIG3-207ENST00000586119 PORCNQ9H237 461 aa14.24□□□□□ -0.13
LIG3-207ENST00000586119 HMX1Q9NP08 348 aaPredicted RBP14.24□□□□□ -0.13
LIG3-207ENST00000586119 TMOD4Q9NZQ9 345 aa14.24□□□□□ -0.13
LIG3-207ENST00000586119 ZBTB21Q9ULJ3 1066 aa14.24□□□□□ -0.13
LIG3-207ENST00000586119 ZMYND8Q9ULU4 1186 aaPredicted RBP14.24□□□□□ -0.13
LIG3-207ENST00000586119 RPTORQ8N122 1335 aa14.23□□□□□ -0.13
LIG3-207ENST00000586119 USP17L10C9JJH3 530 aa14.23□□□□□ -0.13
LIG3-207ENST00000586119 GH2P01242 217 aa14.23□□□□□ -0.13
LIG3-207ENST00000586119 ASNSP08243 561 aa14.23□□□□□ -0.13
LIG3-207ENST00000586119 EVX2Q03828 476 aa14.23□□□□□ -0.13
LIG3-207ENST00000586119 ZYXQ15942 572 aaKnown RBP14.23□□□□□ -0.13
LIG3-207ENST00000586119 CCL14Q16627 93 aa14.23□□□□□ -0.13
LIG3-207ENST00000586119 C7orf61Q8IZ16 206 aa14.23□□□□□ -0.13
LIG3-207ENST00000586119 GPRC5AQ8NFJ5 357 aa14.23□□□□□ -0.13
LIG3-207ENST00000586119 NOP58Q9Y2X3 529 aaKnown RBP14.23□□□□□ -0.13
LIG3-207ENST00000586119 MAST2Q6P0Q8 1798 aa14.23□□□□□ -0.13
LIG3-207ENST00000586119 DDX60LQ5H9U9 1706 aaKnown RBP14.22□□□□□ -0.13
LIG3-207ENST00000586119 C19orf81C9J6K1 198 aa14.22□□□□□ -0.13
LIG3-207ENST00000586119 IDH1O75874 414 aaKnown RBP14.22□□□□□ -0.13
LIG3-207ENST00000586119 PLCG2P16885 1265 aa14.22□□□□□ -0.13
LIG3-207ENST00000586119 SYN1P17600 705 aa14.22□□□□□ -0.13
LIG3-207ENST00000586119 MAGEB6Q8N7X4 407 aa14.22□□□□□ -0.13
LIG3-207ENST00000586119 ZNF512BQ96KM6 892 aaPredicted RBP14.22□□□□□ -0.13
LIG3-207ENST00000586119 PAGR1Q9BTK6 254 aa14.22□□□□□ -0.13
LIG3-207ENST00000586119 CNMDO75829 334 aa14.21□□□□□ -0.13
LIG3-207ENST00000586119 PRKAR2AP13861 404 aaKnown RBP14.21□□□□□ -0.13
LIG3-207ENST00000586119 CCND3P30281 292 aaPredicted RBP14.21□□□□□ -0.13
LIG3-207ENST00000586119 CACNB2Q08289 660 aaPredicted RBP14.21□□□□□ -0.13
LIG3-207ENST00000586119 ITPRIPQ8IWB1 547 aa14.21□□□□□ -0.13
LIG3-207ENST00000586119 ACER1Q8TDN7 264 aa14.21□□□□□ -0.13
LIG3-207ENST00000586119 USP6NLQ92738 828 aa14.21□□□□□ -0.13
LIG3-207ENST00000586119 NUDT12Q9BQG2 462 aa14.21□□□□□ -0.13
LIG3-207ENST00000586119 TRIM34Q9BYJ4 488 aa14.21□□□□□ -0.13
LIG3-207ENST00000586119 USP5P45974 858 aa14.2□□□□□ -0.14
LIG3-207ENST00000586119 PLCD1P51178 756 aa14.2□□□□□ -0.14
LIG3-207ENST00000586119 ERVK-9P63128 1117 aa14.2□□□□□ -0.14
LIG3-207ENST00000586119 ERVK-24P63145 666 aa14.2□□□□□ -0.14
LIG3-207ENST00000586119 MAP3K21Q5TCX8 1036 aa14.2□□□□□ -0.14
LIG3-207ENST00000586119 TATDN1Q6P1N9 297 aa14.2□□□□□ -0.14
LIG3-207ENST00000586119 USP17L2Q6R6M4 530 aa14.2□□□□□ -0.14
LIG3-207ENST00000586119 GDF15Q99988 308 aa14.2□□□□□ -0.14
LIG3-207ENST00000586119 C11orf49Q9H6J7 331 aa14.2□□□□□ -0.14
LIG3-207ENST00000586119 OGDHLQ9ULD0 1010 aa14.2□□□□□ -0.14
LIG3-207ENST00000586119 EXOC6BQ9Y2D4 811 aa14.2□□□□□ -0.14
LIG3-207ENST00000586119 PFASO15067 1338 aa14.19□□□□□ -0.14
LIG3-207ENST00000586119 HLA-DOAP06340 250 aa14.19□□□□□ -0.14
LIG3-207ENST00000586119 GUCY1A2P33402 732 aa14.19□□□□□ -0.14
LIG3-207ENST00000586119 MORN1Q5T089 497 aa14.19□□□□□ -0.14
LIG3-207ENST00000586119 LHX8Q68G74 356 aa14.19□□□□□ -0.14
LIG3-207ENST00000586119 CEP85Q6P2H3 762 aa14.19□□□□□ -0.14
LIG3-207ENST00000586119 GPR142Q7Z601 462 aa14.19□□□□□ -0.14
LIG3-207ENST00000586119 NBPF3Q9H094 633 aa14.19□□□□□ -0.14
LIG3-207ENST00000586119 FLRT1Q9NZU1 646 aa14.19□□□□□ -0.14
LIG3-207ENST00000586119 RAB3GAP1Q15042 981 aa14.18□□□□□ -0.14
LIG3-207ENST00000586119 SLFNL1Q499Z3 407 aa14.18□□□□□ -0.14
LIG3-207ENST00000586119 PLEKHH3Q7Z736 793 aa14.18□□□□□ -0.14
LIG3-207ENST00000586119 FTSJ3Q8IY81 847 aaKnown RBP14.18□□□□□ -0.14
LIG3-207ENST00000586119 ANKLE1Q8NAG6 615 aa14.18□□□□□ -0.14
LIG3-207ENST00000586119 PANK1Q8TE04 598 aa14.18□□□□□ -0.14
LIG3-207ENST00000586119 IL1RAPL2Q9NP60 686 aa14.18□□□□□ -0.14
LIG3-207ENST00000586119 BTBD7Q9P203 1132 aa14.18□□□□□ -0.14
LIG3-207ENST00000586119 XRCC5P13010 732 aaKnown RBP14.17□□□□□ -0.14
LIG3-207ENST00000586119 ZKSCAN1P17029 563 aaPredicted RBP14.17□□□□□ -0.14
LIG3-207ENST00000586119 MAPK4P31152 587 aa14.17□□□□□ -0.14
LIG3-207ENST00000586119 SHMT1P34896 483 aa14.17□□□□□ -0.14
LIG3-207ENST00000586119 HNRNPUQ00839 825 aaKnown RBP eCLIP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms