RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 MECOMQ03112 1051 aa9.39□□□□□ -0.91
VPS39-213ENST00000570062 CHAF1AQ13111 956 aaPredicted RBP9.39□□□□□ -0.91
VPS39-213ENST00000570062 ADCK5Q3MIX3 580 aa9.39□□□□□ -0.91
VPS39-213ENST00000570062 CCDC178Q5BJE1 867 aa9.39□□□□□ -0.91
VPS39-213ENST00000570062 CPLX2Q6PUV4 134 aaKnown RBP9.39□□□□□ -0.91
VPS39-213ENST00000570062 MFSD6Q6ZSS7 791 aa9.39□□□□□ -0.91
VPS39-213ENST00000570062 ARPP21Q9UBL0 812 aaPredicted RBP9.39□□□□□ -0.91
VPS39-213ENST00000570062 ERICH2A1L162 156 aa9.38□□□□□ -0.91
VPS39-213ENST00000570062 GSG1L2A8MUP6 293 aa9.38□□□□□ -0.91
VPS39-213ENST00000570062 RCAN1P53805 252 aa9.38□□□□□ -0.91
VPS39-213ENST00000570062 HMGN5P82970 282 aaKnown RBP9.38□□□□□ -0.91
VPS39-213ENST00000570062 SKOR2Q2VWA4 1001 aaPredicted RBP9.38□□□□□ -0.91
VPS39-213ENST00000570062 SBK1Q52WX2 424 aa9.38□□□□□ -0.91
VPS39-213ENST00000570062 AKNAD1Q5T1N1 836 aa9.38□□□□□ -0.91
VPS39-213ENST00000570062 SYNE3Q6ZMZ3 975 aa9.38□□□□□ -0.91
VPS39-213ENST00000570062 Q6ZUG5 572 aa9.38□□□□□ -0.91
VPS39-213ENST00000570062 TTLL6Q8N841 843 aa9.38□□□□□ -0.91
VPS39-213ENST00000570062 STAG1Q8WVM7 1258 aa9.38□□□□□ -0.91
VPS39-213ENST00000570062 RIOK1Q9BRS2 568 aaKnown RBP9.38□□□□□ -0.91
VPS39-213ENST00000570062 MTFR1LQ9H019 292 aa9.38□□□□□ -0.91
VPS39-213ENST00000570062 POLLQ9UGP5 575 aa9.38□□□□□ -0.91
VPS39-213ENST00000570062 NRXN2Q9P2S2 1712 aa9.38□□□□□ -0.91
VPS39-213ENST00000570062 CHD4Q14839 1912 aa9.38□□□□□ -0.91
VPS39-213ENST00000570062 CDKL5O76039 1030 aa9.37□□□□□ -0.91
VPS39-213ENST00000570062 ITGBL1O95965 494 aaPredicted RBP9.37□□□□□ -0.91
VPS39-213ENST00000570062 LIFRP42702 1097 aa9.37□□□□□ -0.91
VPS39-213ENST00000570062 HDLBPQ00341 1268 aaKnown RBP9.37□□□□□ -0.91
VPS39-213ENST00000570062 NFKBIBQ15653 356 aa9.37□□□□□ -0.91
VPS39-213ENST00000570062 CSPP1Q1MSJ5 1256 aa9.37□□□□□ -0.91
VPS39-213ENST00000570062 CCDC93Q567U6 631 aa9.37□□□□□ -0.91
VPS39-213ENST00000570062 NYAP1Q6ZVC0 841 aa9.37□□□□□ -0.91
VPS39-213ENST00000570062 SPRYD3Q8NCJ5 442 aa9.37□□□□□ -0.91
VPS39-213ENST00000570062 ESR2Q92731 530 aa9.37□□□□□ -0.91
VPS39-213ENST00000570062 ARMT1Q9H993 441 aa9.37□□□□□ -0.91
VPS39-213ENST00000570062 SEPT9Q9UHD8 586 aaPredicted RBP9.37□□□□□ -0.91
VPS39-213ENST00000570062 IQSEC3Q9UPP2 1182 aaPredicted RBP9.37□□□□□ -0.91
VPS39-213ENST00000570062 QSER1Q2KHR3 1735 aa9.36□□□□□ -0.91
VPS39-213ENST00000570062 GPR75-ASB3A0A0A6YYF3 556 aa9.36□□□□□ -0.91
VPS39-213ENST00000570062 CCDC196A0A1B0GTZ2 297 aa9.36□□□□□ -0.91
VPS39-213ENST00000570062 PRC1O43663 620 aa9.36□□□□□ -0.91
VPS39-213ENST00000570062 PFKFB2O60825 505 aa9.36□□□□□ -0.91
VPS39-213ENST00000570062 PDE4BQ07343 736 aa9.36□□□□□ -0.91
VPS39-213ENST00000570062 TOB2Q14106 344 aaPredicted RBP9.36□□□□□ -0.91
VPS39-213ENST00000570062 STRIP1Q5VSL9 837 aa9.36□□□□□ -0.91
VPS39-213ENST00000570062 MSL1Q68DK7 614 aa9.36□□□□□ -0.91
VPS39-213ENST00000570062 TTLL5Q6EMB2 1281 aa9.36□□□□□ -0.91
VPS39-213ENST00000570062 TXNRD3Q86VQ6 643 aa9.36□□□□□ -0.91
VPS39-213ENST00000570062 IQCA1Q86XH1 822 aa9.36□□□□□ -0.91
VPS39-213ENST00000570062 MB21D2Q8IYB1 491 aaPredicted RBP9.36□□□□□ -0.91
VPS39-213ENST00000570062 LCORLQ8N3X6 602 aa9.36□□□□□ -0.91
VPS39-213ENST00000570062 DDX12PQ92771 950 aa9.36□□□□□ -0.91
VPS39-213ENST00000570062 PSMD1Q99460 953 aa9.36□□□□□ -0.91
VPS39-213ENST00000570062 TPCN1Q9ULQ1 816 aa9.36□□□□□ -0.91
VPS39-213ENST00000570062 ANGEL1Q9UNK9 670 aaKnown RBP9.36□□□□□ -0.91
VPS39-213ENST00000570062 MROH7-TTC4A0A0A0MT08 1334 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 MYO3BQ8WXR4 1341 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 FOXP2O15409 715 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 CHGBP05060 677 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 FGRP09769 529 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 CALM1P0DP23 149 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 CALM2P0DP24 149 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 CALM3P0DP25 149 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 KLRK1P26718 216 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 PRDX5P30044 214 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 MCM4P33991 863 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 USP5P45974 858 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 PPARAQ07869 468 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 ME3Q16798 604 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 MFSD14BQ5SR56 506 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 HHIPL2Q6UWX4 724 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 MIGA1Q8NAN2 632 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 FAM184AQ8NB25 1140 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 C7orf43Q8WVR3 580 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 BRF1Q92994 677 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 GTF3C6Q969F1 213 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 PIM2Q9P1W9 311 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 CD2APQ9Y5K6 639 aa9.35□□□□□ -0.91
VPS39-213ENST00000570062 GAKO14976 1311 aa9.34□□□□□ -0.91
VPS39-213ENST00000570062 C10orf71Q711Q0 1435 aa9.34□□□□□ -0.91
VPS39-213ENST00000570062 ORC4O43929 436 aa9.34□□□□□ -0.91
VPS39-213ENST00000570062 BRD1O95696 1058 aa9.34□□□□□ -0.91
VPS39-213ENST00000570062 HAND2P61296 217 aa9.34□□□□□ -0.91
VPS39-213ENST00000570062 GTF2IP78347 998 aa9.34□□□□□ -0.91
VPS39-213ENST00000570062 KIAA2012Q0VF49 1180 aa9.34□□□□□ -0.91
VPS39-213ENST00000570062 SLFNL1Q499Z3 407 aa9.34□□□□□ -0.91
VPS39-213ENST00000570062 STOX1Q6ZVD7 989 aa9.34□□□□□ -0.91
VPS39-213ENST00000570062 SGMS1Q86VZ5 419 aa9.34□□□□□ -0.91
VPS39-213ENST00000570062 CCDC83Q8IWF9 413 aa9.34□□□□□ -0.91
VPS39-213ENST00000570062 WASF1Q92558 559 aa9.34□□□□□ -0.91
VPS39-213ENST00000570062 TNPO1Q92973 898 aaKnown RBP9.34□□□□□ -0.91
VPS39-213ENST00000570062 UBAC1Q9BSL1 405 aa9.34□□□□□ -0.91
VPS39-213ENST00000570062 WBP1LQ9NX94 342 aa9.34□□□□□ -0.91
VPS39-213ENST00000570062 AATFQ9NY61 560 aaKnown RBP eCLIP9.34□□□□□ -0.91
VPS39-213ENST00000570062 PPP1R1BQ9UD71 204 aaPredicted RBP9.34□□□□□ -0.91
VPS39-213ENST00000570062 TNRC6CQ9HCJ0 1690 aaKnown RBP9.34□□□□□ -0.91
VPS39-213ENST00000570062 AKAP11Q9UKA4 1901 aa9.33□□□□□ -0.92
VPS39-213ENST00000570062 USP17L3A6NCW0 530 aa9.33□□□□□ -0.92
VPS39-213ENST00000570062 USP17L4A6NCW7 530 aa9.33□□□□□ -0.92
VPS39-213ENST00000570062 CCDC69A6NI79 296 aa9.33□□□□□ -0.92
VPS39-213ENST00000570062 WTIPA6NIX2 430 aaPredicted RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms