RNA–Protein interactions for RNA: ENST00000568169.5

TCF4-238, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-238	ENST00000568169	TREML2	Q5T2D2	321 aa		14.13	□□□□□ -0.15
TCF4-238	ENST00000568169	SPTY2D1	Q68D10	685 aa	Predicted RBP	14.13	□□□□□ -0.15
TCF4-238	ENST00000568169	PROCA1	Q8NCQ7	364 aa	Predicted RBP	14.13	□□□□□ -0.15
TCF4-238	ENST00000568169	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	14.13	□□□□□ -0.15
TCF4-238	ENST00000568169	STAP2	Q9UGK3	403 aa		14.13	□□□□□ -0.15
TCF4-238	ENST00000568169	PNMA3	Q9UL41	463 aa		14.13	□□□□□ -0.15
TCF4-238	ENST00000568169	HDAC5	Q9UQL6	1122 aa		14.13	□□□□□ -0.15
TCF4-238	ENST00000568169	SIPA1L1	O43166	1804 aa		14.13	□□□□□ -0.15
TCF4-238	ENST00000568169	GCLC	P48506	637 aa	Predicted RBP	14.12	□□□□□ -0.15
TCF4-238	ENST00000568169	TIMM10	P62072	90 aa		14.12	□□□□□ -0.15
TCF4-238	ENST00000568169	MECOM	Q03112	1051 aa		14.12	□□□□□ -0.15
TCF4-238	ENST00000568169	SPP2	Q13103	211 aa		14.12	□□□□□ -0.15
TCF4-238	ENST00000568169	NECAB2	Q7Z6G3	386 aa		14.12	□□□□□ -0.15
TCF4-238	ENST00000568169	SLC17A8	Q8NDX2	589 aa		14.12	□□□□□ -0.15
TCF4-238	ENST00000568169	DIS3L	Q8TF46	1054 aa	Known RBP	14.12	□□□□□ -0.15
TCF4-238	ENST00000568169	ZNF384	Q8TF68	577 aa		14.12	□□□□□ -0.15
TCF4-238	ENST00000568169	LRCH3	Q96II8	777 aa		14.12	□□□□□ -0.15
TCF4-238	ENST00000568169	GDF15	Q99988	308 aa		14.12	□□□□□ -0.15
TCF4-238	ENST00000568169	OSBPL5	Q9H0X9	879 aa	Predicted RBP	14.12	□□□□□ -0.15
TCF4-238	ENST00000568169	SMC4	Q9NTJ3	1288 aa		14.12	□□□□□ -0.15
TCF4-238	ENST00000568169	GJD2	Q9UKL4	321 aa		14.12	□□□□□ -0.15
TCF4-238	ENST00000568169	TAOK2	Q9UL54	1235 aa		14.12	□□□□□ -0.15
TCF4-238	ENST00000568169	COL2A1	P02458	1487 aa	Predicted RBP	14.12	□□□□□ -0.15
TCF4-238	ENST00000568169	DLL1	O00548	723 aa		14.11	□□□□□ -0.15
TCF4-238	ENST00000568169	HMGCR	P04035	888 aa		14.11	□□□□□ -0.15
TCF4-238	ENST00000568169	BMP8B	P34820	402 aa		14.11	□□□□□ -0.15
TCF4-238	ENST00000568169	ERICH6	Q7L0X2	663 aa		14.11	□□□□□ -0.15
TCF4-238	ENST00000568169	ANKLE1	Q8NAG6	615 aa		14.11	□□□□□ -0.15
TCF4-238	ENST00000568169	ZNF280C	Q8ND82	737 aa		14.11	□□□□□ -0.15
TCF4-238	ENST00000568169	XAGE2	Q96GT9	111 aa		14.11	□□□□□ -0.15
TCF4-238	ENST00000568169	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	14.11	□□□□□ -0.15
TCF4-238	ENST00000568169	MYO5A	Q9Y4I1	1855 aa	Known RBP	14.11	□□□□□ -0.15
TCF4-238	ENST00000568169	CUL9	Q8IWT3	2517 aa		14.11	□□□□□ -0.15
TCF4-238	ENST00000568169	FOCAD	Q5VW36	1801 aa		14.11	□□□□□ -0.15
TCF4-238	ENST00000568169		A0A1B0GUL7	405 aa		14.1	□□□□□ -0.15
TCF4-238	ENST00000568169	FAM196B	A6NMK8	535 aa		14.1	□□□□□ -0.15
TCF4-238	ENST00000568169	MAP4K4	O95819	1239 aa	Predicted RBP	14.1	□□□□□ -0.15
TCF4-238	ENST00000568169	CAP2	P40123	477 aa		14.1	□□□□□ -0.15
TCF4-238	ENST00000568169	TBC1D2	Q9BYX2	928 aa		14.1	□□□□□ -0.15
TCF4-238	ENST00000568169	RPTOR	Q8N122	1335 aa		14.1	□□□□□ -0.15
TCF4-238	ENST00000568169	LDHC	P07864	332 aa		14.09	□□□□□ -0.15
TCF4-238	ENST00000568169	MNX1	P50219	401 aa	Predicted RBP	14.09	□□□□□ -0.15
TCF4-238	ENST00000568169	HMGCS2	P54868	508 aa		14.09	□□□□□ -0.15
TCF4-238	ENST00000568169	PABPC4	Q13310	644 aa	Known RBP eCLIP	14.09	□□□□□ -0.15
TCF4-238	ENST00000568169	POLA2	Q14181	598 aa		14.09	□□□□□ -0.15
TCF4-238	ENST00000568169	RRP1B	Q14684	758 aa	Known RBP	14.09	□□□□□ -0.15
TCF4-238	ENST00000568169	MVP	Q14764	893 aa	Known RBP	14.09	□□□□□ -0.15
TCF4-238	ENST00000568169	SH3D19	Q5HYK7	790 aa		14.09	□□□□□ -0.15
TCF4-238	ENST00000568169	GPR153	Q6NV75	609 aa		14.09	□□□□□ -0.15
TCF4-238	ENST00000568169	ASCC2	Q9H1I8	757 aa	Predicted RBP	14.09	□□□□□ -0.15
TCF4-238	ENST00000568169	HMX1	Q9NP08	348 aa	Predicted RBP	14.09	□□□□□ -0.15
TCF4-238	ENST00000568169	AKAP2	Q9Y2D5	859 aa		14.09	□□□□□ -0.15
TCF4-238	ENST00000568169	USP17L5	A8MUK1	530 aa		14.08	□□□□□ -0.16
TCF4-238	ENST00000568169	GSTO1	P78417	241 aa		14.08	□□□□□ -0.16
TCF4-238	ENST00000568169	TFCP2	Q12800	502 aa		14.08	□□□□□ -0.16
TCF4-238	ENST00000568169	TRIM32	Q13049	653 aa		14.08	□□□□□ -0.16
TCF4-238	ENST00000568169	C7orf61	Q8IZ16	206 aa		14.08	□□□□□ -0.16
TCF4-238	ENST00000568169	TRMT2A	Q8IZ69	625 aa	Known RBP	14.08	□□□□□ -0.16
TCF4-238	ENST00000568169	NSUN4	Q96CB9	384 aa	Known RBP	14.08	□□□□□ -0.16
TCF4-238	ENST00000568169	CDCA7L	Q96GN5	454 aa		14.08	□□□□□ -0.16
TCF4-238	ENST00000568169	MEIS3	Q99687	375 aa		14.08	□□□□□ -0.16
TCF4-238	ENST00000568169	API5	Q9BZZ5	524 aa	Known RBP	14.08	□□□□□ -0.16
TCF4-238	ENST00000568169	NBPF3	Q9H094	633 aa		14.08	□□□□□ -0.16
TCF4-238	ENST00000568169	HMG20B	Q9P0W2	317 aa		14.08	□□□□□ -0.16
TCF4-238	ENST00000568169	MORF4L1	Q9UBU8	362 aa		14.08	□□□□□ -0.16
TCF4-238	ENST00000568169	NOB1	Q9ULX3	412 aa	Known RBP	14.08	□□□□□ -0.16
TCF4-238	ENST00000568169	FRMPD3	Q5JV73	1810 aa		14.08	□□□□□ -0.16
TCF4-238	ENST00000568169	ZNF316	A6NFI3	1004 aa	Predicted RBP	14.07	□□□□□ -0.16
TCF4-238	ENST00000568169	MTX1	Q13505	466 aa		14.07	□□□□□ -0.16
TCF4-238	ENST00000568169	SPATA5	Q8NB90	893 aa		14.07	□□□□□ -0.16
TCF4-238	ENST00000568169	HERC5	Q9UII4	1024 aa	Known RBP	14.07	□□□□□ -0.16
TCF4-238	ENST00000568169	OGDHL	Q9ULD0	1010 aa		14.07	□□□□□ -0.16
TCF4-238	ENST00000568169	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	14.07	□□□□□ -0.16
TCF4-238	ENST00000568169	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	14.07	□□□□□ -0.16
TCF4-238	ENST00000568169	MYH1	P12882	1939 aa		14.06	□□□□□ -0.16
TCF4-238	ENST00000568169	CT47B1	P0C2W7	299 aa	Predicted RBP	14.06	□□□□□ -0.16
TCF4-238	ENST00000568169	ATXN8OS	P0DMR3	200 aa		14.06	□□□□□ -0.16
TCF4-238	ENST00000568169	MAP3K21	Q5TCX8	1036 aa		14.06	□□□□□ -0.16
TCF4-238	ENST00000568169	PI16	Q6UXB8	463 aa		14.06	□□□□□ -0.16
TCF4-238	ENST00000568169	TBC1D9	Q6ZT07	1266 aa		14.06	□□□□□ -0.16
TCF4-238	ENST00000568169	TRIB2	Q92519	343 aa		14.06	□□□□□ -0.16
TCF4-238	ENST00000568169	WDR18	Q9BV38	432 aa		14.06	□□□□□ -0.16
TCF4-238	ENST00000568169	C11orf49	Q9H6J7	331 aa		14.06	□□□□□ -0.16
TCF4-238	ENST00000568169	AS3MT	Q9HBK9	375 aa		14.06	□□□□□ -0.16
TCF4-238	ENST00000568169	MAST2	Q6P0Q8	1798 aa		14.06	□□□□□ -0.16
TCF4-238	ENST00000568169	SRGAP3	O43295	1099 aa		14.05	□□□□□ -0.16
TCF4-238	ENST00000568169	ARID4A	P29374	1257 aa	Predicted RBP	14.05	□□□□□ -0.16
TCF4-238	ENST00000568169	HOXA7	P31268	230 aa	Predicted RBP	14.05	□□□□□ -0.16
TCF4-238	ENST00000568169	BACE1	P56817	501 aa		14.05	□□□□□ -0.16
TCF4-238	ENST00000568169	LRIT3	Q3SXY7	679 aa		14.05	□□□□□ -0.16
TCF4-238	ENST00000568169	NEUROD6	Q96NK8	337 aa		14.05	□□□□□ -0.16
TCF4-238	ENST00000568169	PI4KB	Q9UBF8	816 aa		14.05	□□□□□ -0.16
TCF4-238	ENST00000568169	XRCC5	P13010	732 aa	Known RBP	14.04	□□□□□ -0.16
TCF4-238	ENST00000568169	SYN1	P17600	705 aa		14.04	□□□□□ -0.16
TCF4-238	ENST00000568169	MAGEA10	P43363	369 aa	Predicted RBP	14.04	□□□□□ -0.16
TCF4-238	ENST00000568169	IRX3	P78415	501 aa	Predicted RBP	14.04	□□□□□ -0.16
TCF4-238	ENST00000568169	TEX11	Q8IYF3	940 aa		14.04	□□□□□ -0.16
TCF4-238	ENST00000568169	P2RX7	Q99572	595 aa	Known RBP	14.04	□□□□□ -0.16
TCF4-238	ENST00000568169	NUDT12	Q9BQG2	462 aa		14.04	□□□□□ -0.16
TCF4-238	ENST00000568169	RAI14	Q9P0K7	980 aa		14.04	□□□□□ -0.16

Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms