RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 ZNF219Q9P2Y4 722 aaPredicted RBP30.69■■■□□ 2.5
SHOX2-204ENST00000483851 DDX60LQ5H9U9 1706 aaKnown RBP30.68■■■□□ 2.5
SHOX2-204ENST00000483851 SEC23AQ15436 765 aa30.68■■■□□ 2.5
SHOX2-204ENST00000483851 DDX11Q96FC9 970 aa30.68■■■□□ 2.5
SHOX2-204ENST00000483851 ZSCAN10Q96SZ4 725 aaPredicted RBP30.68■■■□□ 2.5
SHOX2-204ENST00000483851 USP17L8P0C7I0 530 aa30.67■■■□□ 2.5
SHOX2-204ENST00000483851 ZNF287Q9HBT7 754 aa30.67■■■□□ 2.5
SHOX2-204ENST00000483851 ZNF646O15015 1829 aaPredicted RBP30.67■■■□□ 2.5
SHOX2-204ENST00000483851 USP17L3A6NCW0 530 aa30.67■■■□□ 2.5
SHOX2-204ENST00000483851 USP17L4A6NCW7 530 aa30.67■■■□□ 2.5
SHOX2-204ENST00000483851 RANBP6O60518 1105 aaKnown RBP30.67■■■□□ 2.5
SHOX2-204ENST00000483851 USP17L1Q7RTZ2 530 aa30.67■■■□□ 2.5
SHOX2-204ENST00000483851 TNKSO95271 1327 aa30.66■■■□□ 2.5
SHOX2-204ENST00000483851 DACT2Q5SW24 774 aa30.66■■■□□ 2.5
SHOX2-204ENST00000483851 CDC37L1Q7L3B6 337 aa30.66■■■□□ 2.5
SHOX2-204ENST00000483851 TMEM87AQ8NBN3 555 aa30.66■■■□□ 2.5
SHOX2-204ENST00000483851 TEKT1Q969V4 418 aa30.66■■■□□ 2.5
SHOX2-204ENST00000483851 SENP2Q9HC62 589 aa30.66■■■□□ 2.5
SHOX2-204ENST00000483851 H3BQV1 296 aa30.65■■■□□ 2.5
SHOX2-204ENST00000483851 MRE11P49959 708 aa30.65■■■□□ 2.5
SHOX2-204ENST00000483851 IFFO2Q5TF58 517 aa30.65■■■□□ 2.5
SHOX2-204ENST00000483851 STK11IPQ8N1F8 1099 aa30.65■■■□□ 2.5
SHOX2-204ENST00000483851 ZSCAN16Q9H4T2 348 aaPredicted RBP30.65■■■□□ 2.5
SHOX2-204ENST00000483851 CCDC196A0A1B0GTZ2 297 aa30.65■■■□□ 2.5
SHOX2-204ENST00000483851 SMIM22K7EJ46 135 aa30.65■■■□□ 2.5
SHOX2-204ENST00000483851 ZBTB7AO95365 584 aa30.65■■■□□ 2.5
SHOX2-204ENST00000483851 CYP2D6P10635 497 aa30.65■■■□□ 2.5
SHOX2-204ENST00000483851 AOC3Q16853 763 aa30.65■■■□□ 2.5
SHOX2-204ENST00000483851 CSPP1Q1MSJ5 1256 aa30.65■■■□□ 2.5
SHOX2-204ENST00000483851 FLT1P17948 1338 aa30.64■■■□□ 2.5
SHOX2-204ENST00000483851 GOLGA8AA7E2F4 631 aa30.64■■■□□ 2.5
SHOX2-204ENST00000483851 CCDC178Q5BJE1 867 aa30.64■■■□□ 2.5
SHOX2-204ENST00000483851 MAPKAPK5Q8IW41 473 aa30.64■■■□□ 2.5
SHOX2-204ENST00000483851 PIM2Q9P1W9 311 aa30.64■■■□□ 2.5
SHOX2-204ENST00000483851 SCN9AQ15858 1988 aa30.64■■■□□ 2.5
SHOX2-204ENST00000483851 PPIP5K2O43314 1243 aa30.63■■■□□ 2.49
SHOX2-204ENST00000483851 PRPF40AO75400 957 aaKnown RBP30.63■■■□□ 2.49
SHOX2-204ENST00000483851 POLR3DP05423 398 aaPredicted RBP30.63■■■□□ 2.49
SHOX2-204ENST00000483851 FDPSP14324 419 aaKnown RBP30.63■■■□□ 2.49
SHOX2-204ENST00000483851 MICU3Q86XE3 530 aa30.63■■■□□ 2.49
SHOX2-204ENST00000483851 ZKSCAN3Q9BRR0 538 aa30.63■■■□□ 2.49
SHOX2-204ENST00000483851 DDX49Q9Y6V7 483 aaKnown RBP30.63■■■□□ 2.49
SHOX2-204ENST00000483851 PSME4Q14997 1843 aa30.63■■■□□ 2.49
SHOX2-204ENST00000483851 DTNBO60941 627 aa30.63■■■□□ 2.49
SHOX2-204ENST00000483851 ENAHQ8N8S7 591 aaPredicted RBP30.63■■■□□ 2.49
SHOX2-204ENST00000483851 ZDHHC15Q96MV8 337 aa30.62■■■□□ 2.49
SHOX2-204ENST00000483851 ORC3Q9UBD5 711 aaPredicted RBP30.62■■■□□ 2.49
SHOX2-204ENST00000483851 MYH1P12882 1939 aa30.62■■■□□ 2.49
SHOX2-204ENST00000483851 PRDM1O75626 825 aa30.61■■■□□ 2.49
SHOX2-204ENST00000483851 GAS2L3Q86XJ1 694 aa30.61■■■□□ 2.49
SHOX2-204ENST00000483851 ZNF654Q8IZM8 581 aa30.61■■■□□ 2.49
SHOX2-204ENST00000483851 TCHHQ07283 1943 aa30.61■■■□□ 2.49
SHOX2-204ENST00000483851 F8W031 263 aaPredicted RBP30.61■■■□□ 2.49
SHOX2-204ENST00000483851 CALM1P0DP23 149 aa30.61■■■□□ 2.49
SHOX2-204ENST00000483851 CALM2P0DP24 149 aa30.61■■■□□ 2.49
SHOX2-204ENST00000483851 CALM3P0DP25 149 aa30.61■■■□□ 2.49
SHOX2-204ENST00000483851 IFIT1BQ5T764 474 aaKnown RBP30.61■■■□□ 2.49
SHOX2-204ENST00000483851 FAM217BQ9NTX9 383 aaPredicted RBP30.61■■■□□ 2.49
SHOX2-204ENST00000483851 STK36Q9NRP7 1315 aa30.6■■■□□ 2.49
SHOX2-204ENST00000483851 CDC27P30260 824 aa30.6■■■□□ 2.49
SHOX2-204ENST00000483851 ADD1P35611 737 aaKnown RBP30.6■■■□□ 2.49
SHOX2-204ENST00000483851 NTRK3Q16288 839 aa30.6■■■□□ 2.49
SHOX2-204ENST00000483851 GRPEL1Q9HAV7 217 aa30.6■■■□□ 2.49
SHOX2-204ENST00000483851 MBD3O95983 291 aa30.59■■■□□ 2.49
SHOX2-204ENST00000483851 MXD3Q9BW11 206 aa30.59■■■□□ 2.49
SHOX2-204ENST00000483851 MKNK2Q9HBH9 465 aa30.59■■■□□ 2.49
SHOX2-204ENST00000483851 KCNQ5Q9NR82 932 aa30.59■■■□□ 2.49
SHOX2-204ENST00000483851 TCP11L1Q9NUJ3 509 aa30.59■■■□□ 2.49
SHOX2-204ENST00000483851 ATF5Q9Y2D1 282 aaPredicted RBP30.59■■■□□ 2.49
SHOX2-204ENST00000483851 TSPY2A6NKD2 308 aa30.59■■■□□ 2.49
SHOX2-204ENST00000483851 IFNAR1P17181 557 aa30.59■■■□□ 2.49
SHOX2-204ENST00000483851 CRKP46108 304 aa30.59■■■□□ 2.49
SHOX2-204ENST00000483851 RTN1Q16799 776 aa30.59■■■□□ 2.49
SHOX2-204ENST00000483851 C16orf86Q6ZW13 317 aa30.59■■■□□ 2.49
SHOX2-204ENST00000483851 SERPINA10Q9UK55 444 aa30.59■■■□□ 2.49
SHOX2-204ENST00000483851 MYO3BQ8WXR4 1341 aa30.58■■■□□ 2.49
SHOX2-204ENST00000483851 EVX2Q03828 476 aa30.58■■■□□ 2.49
SHOX2-204ENST00000483851 APOBEC3HQ6NTF7 200 aaKnown RBP30.58■■■□□ 2.49
SHOX2-204ENST00000483851 CATIPQ7Z7H3 387 aa30.58■■■□□ 2.49
SHOX2-204ENST00000483851 RAB11FIP4Q86YS3 637 aa30.58■■■□□ 2.49
SHOX2-204ENST00000483851 FANCBQ8NB91 859 aa30.58■■■□□ 2.49
SHOX2-204ENST00000483851 UPF1Q92900 1129 aaKnown RBP eCLIP30.58■■■□□ 2.49
SHOX2-204ENST00000483851 DDAH1O94760 285 aa30.57■■■□□ 2.48
SHOX2-204ENST00000483851 IARSP41252 1262 aaKnown RBP30.57■■■□□ 2.48
SHOX2-204ENST00000483851 PLCD1P51178 756 aa30.57■■■□□ 2.48
SHOX2-204ENST00000483851 KRT85P78386 507 aa30.57■■■□□ 2.48
SHOX2-204ENST00000483851 RESTQ13127 1097 aa30.57■■■□□ 2.48
SHOX2-204ENST00000483851 TTC6Q86TZ1 520 aa30.57■■■□□ 2.48
SHOX2-204ENST00000483851 ANKS1AQ92625 1134 aa30.57■■■□□ 2.48
SHOX2-204ENST00000483851 CHAMP1Q96JM3 812 aa30.57■■■□□ 2.48
SHOX2-204ENST00000483851 USP40Q9NVE5 1235 aa30.57■■■□□ 2.48
SHOX2-204ENST00000483851 DGKHQ86XP1 1220 aa30.57■■■□□ 2.48
SHOX2-204ENST00000483851 ZNF444Q8N0Y2 327 aaPredicted RBP30.57■■■□□ 2.48
SHOX2-204ENST00000483851 CD2APQ9Y5K6 639 aa30.57■■■□□ 2.48
SHOX2-204ENST00000483851 ECM29Q5VYK3 1845 aa30.57■■■□□ 2.48
SHOX2-204ENST00000483851 BRCA1P38398 1863 aaKnown RBP30.56■■■□□ 2.48
SHOX2-204ENST00000483851 WDHD1O75717 1129 aaPredicted RBP30.56■■■□□ 2.48
SHOX2-204ENST00000483851 SCNN1DP51172 638 aa30.56■■■□□ 2.48
SHOX2-204ENST00000483851 R3HDM1Q15032 1099 aaKnown RBP30.56■■■□□ 2.48
SHOX2-204ENST00000483851 WASF1Q92558 559 aa30.56■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms