RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 NDUFC2-KCTD14E9PQ53 114 aa6.6□□□□□ -1.35
VPS53-202ENST00000389040 KRTAP10-2P60368 255 aa6.6□□□□□ -1.35
VPS53-202ENST00000389040 C6orf99Q4VX62 202 aa6.6□□□□□ -1.35
VPS53-202ENST00000389040 LINC00167Q96N53 147 aa6.6□□□□□ -1.35
VPS53-202ENST00000389040 INAFM2P0DMQ5 153 aa6.59□□□□□ -1.35
VPS53-202ENST00000389040 ORMDL1Q9P0S3 153 aa6.59□□□□□ -1.35
VPS53-202ENST00000389040 HECTD4Q9Y4D8 3996 aa6.59□□□□□ -1.35
VPS53-202ENST00000389040 SLPIP03973 132 aa6.58□□□□□ -1.36
VPS53-202ENST00000389040 SYCNQ0VAF6 134 aa6.58□□□□□ -1.36
VPS53-202ENST00000389040 PKD1P98161 4303 aa6.57□□□□□ -1.36
VPS53-202ENST00000389040 TRBV10-3A0A0K0K1G6 114 aa6.57□□□□□ -1.36
VPS53-202ENST00000389040 ACYP1P07311 99 aa6.57□□□□□ -1.36
VPS53-202ENST00000389040 C9orf163Q8N9P6 203 aa6.57□□□□□ -1.36
VPS53-202ENST00000389040 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.56□□□□□ -1.36
VPS53-202ENST00000389040 TRAV23DV6A0A075B6W5 121 aa6.56□□□□□ -1.36
VPS53-202ENST00000389040 SNCGO76070 127 aa6.56□□□□□ -1.36
VPS53-202ENST00000389040 VPREB1P12018 145 aa6.56□□□□□ -1.36
VPS53-202ENST00000389040 GAGE2EQ4V326 116 aa6.56□□□□□ -1.36
VPS53-202ENST00000389040 OBSCN-AS1Q96MR7 158 aa6.56□□□□□ -1.36
VPS53-202ENST00000389040 GAGE2DQ9UEU5 116 aa6.56□□□□□ -1.36
VPS53-202ENST00000389040 H3BS24 57 aa6.56□□□□□ -1.36
VPS53-202ENST00000389040 LINC00575Q6W349 94 aa6.56□□□□□ -1.36
VPS53-202ENST00000389040 Q6ZRP5 223 aa6.56□□□□□ -1.36
VPS53-202ENST00000389040 C9orf129Q5T035 196 aaKnown RBP6.55□□□□□ -1.36
VPS53-202ENST00000389040 M0R378 163 aa6.54□□□□□ -1.36
VPS53-202ENST00000389040 TMEM256-PLSCR3K7ERE1 68 aa6.54□□□□□ -1.36
VPS53-202ENST00000389040 ZNF73O43830 326 aaPredicted RBP6.54□□□□□ -1.36
VPS53-202ENST00000389040 CDK2AP2O75956 126 aa6.54□□□□□ -1.36
VPS53-202ENST00000389040 DIRC1Q969H9 104 aa6.54□□□□□ -1.36
VPS53-202ENST00000389040 hADV29S1A0JD25 119 aa6.53□□□□□ -1.36
VPS53-202ENST00000389040 GAGE2AQ6NT46 116 aa6.53□□□□□ -1.36
VPS53-202ENST00000389040 C14orf132Q9NPU4 83 aa6.53□□□□□ -1.36
VPS53-202ENST00000389040 DNAH11Q96DT5 4516 aa6.53□□□□□ -1.36
VPS53-202ENST00000389040 TLX1NBP0CAT3 122 aa6.52□□□□□ -1.37
VPS53-202ENST00000389040 LINC00474Q9P2X8 69 aa6.52□□□□□ -1.37
VPS53-202ENST00000389040 PKHD1P08F94 4074 aa6.52□□□□□ -1.37
VPS53-202ENST00000389040 TRBV7-6A0A0J9YX20 115 aa6.52□□□□□ -1.37
VPS53-202ENST00000389040 SDIM1Q6ZPB5 146 aa6.52□□□□□ -1.37
VPS53-202ENST00000389040 Q6ZSA8 131 aa6.52□□□□□ -1.37
VPS53-202ENST00000389040 COX7BP24311 80 aa6.51□□□□□ -1.37
VPS53-202ENST00000389040 KRTAP10-1P60331 282 aa6.51□□□□□ -1.37
VPS53-202ENST00000389040 JMJD7-PLA2G4BH0Y9G9 81 aa6.5□□□□□ -1.37
VPS53-202ENST00000389040 ELOF1P60002 83 aaKnown RBP6.5□□□□□ -1.37
VPS53-202ENST00000389040 GAGE2BQ13066 116 aa6.5□□□□□ -1.37
VPS53-202ENST00000389040 EPPK1P58107 5090 aaKnown RBP6.5□□□□□ -1.37
VPS53-202ENST00000389040 A0A1B0GV72 72 aa6.5□□□□□ -1.37
VPS53-202ENST00000389040 SMCR5Q8TEV8 140 aa6.5□□□□□ -1.37
VPS53-202ENST00000389040 SERTAD4-AS1Q5TG53 156 aa6.49□□□□□ -1.37
VPS53-202ENST00000389040 Q6Q795 121 aa6.49□□□□□ -1.37
VPS53-202ENST00000389040 NKAPP1Q8N9T2 125 aa6.49□□□□□ -1.37
VPS53-202ENST00000389040 LOC107984640A0A0U1RRK4 108 aa6.48□□□□□ -1.37
VPS53-202ENST00000389040 Q6ZQY7 126 aa6.48□□□□□ -1.37
VPS53-202ENST00000389040 LINC00643Q86TS7 51 aa6.48□□□□□ -1.37
VPS53-202ENST00000389040 PLA2G2DQ9UNK4 145 aa6.48□□□□□ -1.37
VPS53-202ENST00000389040 H3BQ85 93 aa6.48□□□□□ -1.37
VPS53-202ENST00000389040 FUSP35637 526 aaKnown RBP eCLIP6.48□□□□□ -1.37
VPS53-202ENST00000389040 TRBV7-7A0A0K0K1E9 115 aa6.47□□□□□ -1.37
VPS53-202ENST00000389040 C7orf33Q8WU49 177 aa6.47□□□□□ -1.37
VPS53-202ENST00000389040 CCKP06307 115 aa6.46□□□□□ -1.37
VPS53-202ENST00000389040 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.46□□□□□ -1.37
VPS53-202ENST00000389040 KCNQ1DNQ9H478 68 aa6.46□□□□□ -1.37
VPS53-202ENST00000389040 IGLV5-37A0A075B6J1 123 aa6.46□□□□□ -1.38
VPS53-202ENST00000389040 FAM168BA1KXE4 195 aa6.45□□□□□ -1.38
VPS53-202ENST00000389040 LAMTOR3Q9UHA4 124 aa6.45□□□□□ -1.38
VPS53-202ENST00000389040 RBM3P98179 157 aaKnown RBP6.44□□□□□ -1.38
VPS53-202ENST00000389040 SPACA4Q8TDM5 124 aa6.44□□□□□ -1.38
VPS53-202ENST00000389040 LINC00846Q9NV44 126 aa6.44□□□□□ -1.38
VPS53-202ENST00000389040 DYNC1H1Q14204 4646 aaKnown RBP6.44□□□□□ -1.38
VPS53-202ENST00000389040 LRP1BQ9NZR2 4599 aa6.44□□□□□ -1.38
VPS53-202ENST00000389040 LORP23490 312 aaPredicted RBP6.44□□□□□ -1.38
VPS53-202ENST00000389040 IMUPQ9GZP8 106 aa6.44□□□□□ -1.38
VPS53-202ENST00000389040 FAM30AQ9NZY2 134 aa6.44□□□□□ -1.38
VPS53-202ENST00000389040 DPH3Q96FX2 82 aa6.43□□□□□ -1.38
VPS53-202ENST00000389040 DNAH5Q8TE73 4624 aa6.43□□□□□ -1.38
VPS53-202ENST00000389040 LOC110117498A0A087WWA1 95 aa6.42□□□□□ -1.38
VPS53-202ENST00000389040 EPM2AB3EWF7 344 aa6.42□□□□□ -1.38
VPS53-202ENST00000389040 NDUFV3P56181 108 aaKnown RBP6.42□□□□□ -1.38
VPS53-202ENST00000389040 KRTAP7-1Q8IUC3 87 aa6.42□□□□□ -1.38
VPS53-202ENST00000389040 PLAC8Q9NZF1 115 aa6.42□□□□□ -1.38
VPS53-202ENST00000389040 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.42□□□□□ -1.38
VPS53-202ENST00000389040 IGLV1-50A0A075B6I6 118 aa6.42□□□□□ -1.38
VPS53-202ENST00000389040 A0A096LNI7 61 aa6.42□□□□□ -1.38
VPS53-202ENST00000389040 PRYO14603 147 aa6.42□□□□□ -1.38
VPS53-202ENST00000389040 SCXQ7RTU7 201 aa6.42□□□□□ -1.38
VPS53-202ENST00000389040 FAM19A5Q7Z5A7 132 aaPredicted RBP6.42□□□□□ -1.38
VPS53-202ENST00000389040 CIRBP-AS1Q8TBR5 109 aa6.42□□□□□ -1.38
VPS53-202ENST00000389040 RPL37AP8A6NKH3 93 aa6.41□□□□□ -1.38
VPS53-202ENST00000389040 Q6ZQT0 140 aa6.41□□□□□ -1.38
VPS53-202ENST00000389040 ANAPC13Q9BS18 74 aa6.41□□□□□ -1.38
VPS53-202ENST00000389040 BIRC6Q9NR09 4857 aa6.41□□□□□ -1.38
VPS53-202ENST00000389040 MRPL55Q7Z7F7 128 aaKnown RBP6.4□□□□□ -1.38
VPS53-202ENST00000389040 DSCR8Q96T75 97 aa6.4□□□□□ -1.38
VPS53-202ENST00000389040 IGKV2-24A0A0C4DH68 120 aa6.4□□□□□ -1.39
VPS53-202ENST00000389040 Q6JHZ5 121 aa6.4□□□□□ -1.39
VPS53-202ENST00000389040 KRTAP4-16G5E9R7 235 aaPredicted RBP6.39□□□□□ -1.39
VPS53-202ENST00000389040 PDE6GP18545 87 aa6.39□□□□□ -1.39
VPS53-202ENST00000389040 SPRR1AP35321 89 aa6.39□□□□□ -1.39
VPS53-202ENST00000389040 Q6ZRX8 168 aa6.39□□□□□ -1.39
VPS53-202ENST00000389040 PANO1I0J062 215 aa6.38□□□□□ -1.39
VPS53-202ENST00000389040 CHTF8P0CG12 524 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms