RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 XGP55808 180 aa14.52□□□□□ -0.09
CDX1-201ENST00000231656 COX7BP24311 80 aa14.51□□□□□ -0.09
CDX1-201ENST00000231656 ELOF1P60002 83 aaKnown RBP14.51□□□□□ -0.09
CDX1-201ENST00000231656 C7orf33Q8WU49 177 aa14.51□□□□□ -0.09
CDX1-201ENST00000231656 RTL8CO15255 209 aa14.5□□□□□ -0.09
CDX1-201ENST00000231656 GAGE2BQ13066 116 aa14.5□□□□□ -0.09
CDX1-201ENST00000231656 FAM168BA1KXE4 195 aa14.49□□□□□ -0.09
CDX1-201ENST00000231656 KMT2CQ8NEZ4 4911 aaKnown RBP14.48□□□□□ -0.09
CDX1-201ENST00000231656 TMEM256-PLSCR3K7ERE1 68 aa14.48□□□□□ -0.09
CDX1-201ENST00000231656 KRTAP7-1Q8IUC3 87 aa14.48□□□□□ -0.09
CDX1-201ENST00000231656 MT-ATP8P03928 68 aa14.47□□□□□ -0.09
CDX1-201ENST00000231656 TNP2Q05952 138 aa14.47□□□□□ -0.09
CDX1-201ENST00000231656 KCNQ1DNQ9H478 68 aa14.47□□□□□ -0.09
CDX1-201ENST00000231656 PCP4P48539 62 aa14.45□□□□□ -0.1
CDX1-201ENST00000231656 ACYP1P07311 99 aa14.45□□□□□ -0.1
CDX1-201ENST00000231656 LINC00528Q8N1L1 170 aa14.45□□□□□ -0.1
CDX1-201ENST00000231656 C14orf132Q9NPU4 83 aa14.45□□□□□ -0.1
CDX1-201ENST00000231656 FAT2Q9NYQ8 4349 aa14.44□□□□□ -0.1
CDX1-201ENST00000231656 HECTD4Q9Y4D8 3996 aa14.44□□□□□ -0.1
CDX1-201ENST00000231656 Q6ZQY7 126 aa14.42□□□□□ -0.1
CDX1-201ENST00000231656 C9orf163Q8N9P6 203 aa14.42□□□□□ -0.1
CDX1-201ENST00000231656 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP14.4□□□□□ -0.1
CDX1-201ENST00000231656 RYR2Q92736 4967 aa14.4□□□□□ -0.1
CDX1-201ENST00000231656 IGLV1-50A0A075B6I6 118 aa14.39□□□□□ -0.11
CDX1-201ENST00000231656 JMJD7-PLA2G4BH0Y9G9 81 aa14.39□□□□□ -0.11
CDX1-201ENST00000231656 FAM19A5Q7Z5A7 132 aaPredicted RBP14.39□□□□□ -0.11
CDX1-201ENST00000231656 A0A096LNI7 61 aa14.39□□□□□ -0.11
CDX1-201ENST00000231656 C16orf90A8MZG2 172 aa14.39□□□□□ -0.11
CDX1-201ENST00000231656 GAGE2AQ6NT46 116 aa14.39□□□□□ -0.11
CDX1-201ENST00000231656 H3BQ85 93 aa14.38□□□□□ -0.11
CDX1-201ENST00000231656 PRYO14603 147 aa14.38□□□□□ -0.11
CDX1-201ENST00000231656 SCGB1A1P11684 91 aa14.38□□□□□ -0.11
CDX1-201ENST00000231656 A0A1B0GV72 72 aa14.37□□□□□ -0.11
CDX1-201ENST00000231656 RPL37AP8A6NKH3 93 aa14.37□□□□□ -0.11
CDX1-201ENST00000231656 FUSP35637 526 aaKnown RBP eCLIP14.37□□□□□ -0.11
CDX1-201ENST00000231656 MRPL55Q7Z7F7 128 aaKnown RBP14.37□□□□□ -0.11
CDX1-201ENST00000231656 DNAH11Q96DT5 4516 aa14.36□□□□□ -0.11
CDX1-201ENST00000231656 SPRR1AP35321 89 aa14.35□□□□□ -0.11
CDX1-201ENST00000231656 KRTAP4-16G5E9R7 235 aaPredicted RBP14.34□□□□□ -0.11
CDX1-201ENST00000231656 SDIM1Q6ZPB5 146 aa14.34□□□□□ -0.11
CDX1-201ENST00000231656 SMCR5Q8TEV8 140 aa14.33□□□□□ -0.12
CDX1-201ENST00000231656 IGLV5-52A0A0A0MRZ9 124 aa14.32□□□□□ -0.12
CDX1-201ENST00000231656 IGKV2-24A0A0C4DH68 120 aa14.32□□□□□ -0.12
CDX1-201ENST00000231656 CCKP06307 115 aa14.31□□□□□ -0.12
CDX1-201ENST00000231656 PKD1P98161 4303 aa14.3□□□□□ -0.12
CDX1-201ENST00000231656 A0A1W2PNN7 141 aa14.3□□□□□ -0.12
CDX1-201ENST00000231656 B5MCH6 92 aa14.3□□□□□ -0.12
CDX1-201ENST00000231656 PKIGQ9Y2B9 76 aa14.3□□□□□ -0.12
CDX1-201ENST00000231656 GHRHP01286 108 aa14.29□□□□□ -0.12
CDX1-201ENST00000231656 KRTAP10-2P60368 255 aa14.29□□□□□ -0.12
CDX1-201ENST00000231656 LAMTOR3Q9UHA4 124 aa14.29□□□□□ -0.12
CDX1-201ENST00000231656 C21orf62-AS1Q17RA5 79 aa14.29□□□□□ -0.12
CDX1-201ENST00000231656 Q6ZRX8 168 aa14.29□□□□□ -0.12
CDX1-201ENST00000231656 RBM3P98179 157 aaKnown RBP14.27□□□□□ -0.12
CDX1-201ENST00000231656 LINC00336Q6ZUF6 198 aa14.27□□□□□ -0.12
CDX1-201ENST00000231656 DNAH5Q8TE73 4624 aa14.27□□□□□ -0.13
CDX1-201ENST00000231656 ETDCA0A1B0GVM5 59 aa14.26□□□□□ -0.13
CDX1-201ENST00000231656 CHTF8P0CG12 524 aa14.26□□□□□ -0.13
CDX1-201ENST00000231656 LINC00643Q86TS7 51 aa14.25□□□□□ -0.13
CDX1-201ENST00000231656 Q9BRP9 147 aa14.25□□□□□ -0.13
CDX1-201ENST00000231656 DHRS4-AS1Q9P1J3 65 aa14.25□□□□□ -0.13
CDX1-201ENST00000231656 LOC110117498A0A087WWA1 95 aa14.24□□□□□ -0.13
CDX1-201ENST00000231656 REG3GQ6UW15 175 aa14.23□□□□□ -0.13
CDX1-201ENST00000231656 Q6ZQT0 140 aa14.23□□□□□ -0.13
CDX1-201ENST00000231656 LINC00846Q9NV44 126 aa14.23□□□□□ -0.13
CDX1-201ENST00000231656 Q6Q795 121 aa14.22□□□□□ -0.13
CDX1-201ENST00000231656 LINC00474Q9P2X8 69 aa14.22□□□□□ -0.13
CDX1-201ENST00000231656 PANO1I0J062 215 aa14.22□□□□□ -0.13
CDX1-201ENST00000231656 NDUFV3P56181 108 aaKnown RBP14.21□□□□□ -0.13
CDX1-201ENST00000231656 TRBV7-7A0A0K0K1E9 115 aa14.19□□□□□ -0.14
CDX1-201ENST00000231656 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14.19□□□□□ -0.14
CDX1-201ENST00000231656 RYR3Q15413 4870 aa14.18□□□□□ -0.14
CDX1-201ENST00000231656 LINC01547P58512 204 aaPredicted RBP14.18□□□□□ -0.14
CDX1-201ENST00000231656 SPACA4Q8TDM5 124 aa14.18□□□□□ -0.14
CDX1-201ENST00000231656 DSCR8Q96T75 97 aa14.18□□□□□ -0.14
CDX1-201ENST00000231656 PKHD1P08F94 4074 aa14.17□□□□□ -0.14
CDX1-201ENST00000231656 Q8N377 158 aa14.17□□□□□ -0.14
CDX1-201ENST00000231656 TRBV7-4A0A0J9YYF1 115 aa14.16□□□□□ -0.14
CDX1-201ENST00000231656 PDE6GP18545 87 aa14.16□□□□□ -0.14
CDX1-201ENST00000231656 PHF5AQ7RTV0 110 aaKnown RBP14.15□□□□□ -0.14
CDX1-201ENST00000231656 DPH3Q96FX2 82 aa14.15□□□□□ -0.14
CDX1-201ENST00000231656 DEFB105AQ8NG35 78 aa14.14□□□□□ -0.15
CDX1-201ENST00000231656 A0A1B0GVY2 172 aa14.13□□□□□ -0.15
CDX1-201ENST00000231656 ERC2-IT1O76042 136 aa14.13□□□□□ -0.15
CDX1-201ENST00000231656 UBE2BP63146 152 aa14.13□□□□□ -0.15
CDX1-201ENST00000231656 IGLV5-48A0A075B6I7 105 aa14.12□□□□□ -0.15
CDX1-201ENST00000231656 KRTAP11-1Q8IUC1 163 aa14.12□□□□□ -0.15
CDX1-201ENST00000231656 IMUPQ9GZP8 106 aa14.12□□□□□ -0.15
CDX1-201ENST00000231656 ST20-AS1Q8NBB2 130 aa14.11□□□□□ -0.15
CDX1-201ENST00000231656 Q6JHZ5 121 aa14.1□□□□□ -0.15
CDX1-201ENST00000231656 KRTAP10-1P60331 282 aa14.09□□□□□ -0.15
CDX1-201ENST00000231656 EPM2AB3EWF7 344 aa14.08□□□□□ -0.16
CDX1-201ENST00000231656 FAM19A1Q7Z5A9 133 aa14.08□□□□□ -0.16
CDX1-201ENST00000231656 DNAH8Q96JB1 4490 aa14.08□□□□□ -0.16
CDX1-201ENST00000231656 FAM30AQ9NZY2 134 aa14.06□□□□□ -0.16
CDX1-201ENST00000231656 PRLHP81277 87 aa14.06□□□□□ -0.16
CDX1-201ENST00000231656 PLAC8Q9NZF1 115 aa14.05□□□□□ -0.16
CDX1-201ENST00000231656 Q6ZSA8 131 aa14.04□□□□□ -0.16
CDX1-201ENST00000231656 IGKV3D-7A0A0C4DH55 119 aa14.03□□□□□ -0.16
CDX1-201ENST00000231656 C3orf22Q8N5N4 141 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms