RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 C1orf43Q9BWL3 253 aa5.09□□□□□ -1.59
COL6A3-208ENST00000468792 PLECQ15149 4684 aaKnown RBP5.08□□□□□ -1.6
COL6A3-208ENST00000468792 ZNF561-AS1K7EIQ3 104 aa5.08□□□□□ -1.6
COL6A3-208ENST00000468792 RNF151Q2KHN1 245 aa5.08□□□□□ -1.6
COL6A3-208ENST00000468792 UNQ6190/PRO20217Q6UXQ8 127 aa5.08□□□□□ -1.6
COL6A3-208ENST00000468792 CLEC2BQ92478 149 aa5.08□□□□□ -1.6
COL6A3-208ENST00000468792 B9D2Q9BPU9 175 aa5.08□□□□□ -1.6
COL6A3-208ENST00000468792 C10orf25Q5T742 122 aa5.07□□□□□ -1.6
COL6A3-208ENST00000468792 C15orf56Q8N910 161 aa5.07□□□□□ -1.6
COL6A3-208ENST00000468792 RMI2Q96E14 147 aa5.07□□□□□ -1.6
COL6A3-208ENST00000468792 C6orf48Q9UBA6 75 aa5.07□□□□□ -1.6
COL6A3-208ENST00000468792 LINC00588Q9Y4M8 146 aa5.07□□□□□ -1.6
COL6A3-208ENST00000468792 COL7A1Q02388 2944 aa5.06□□□□□ -1.6
COL6A3-208ENST00000468792 FAM240AA0A1B0GVK7 77 aa5.06□□□□□ -1.6
COL6A3-208ENST00000468792 NHLRC4P0CG21 123 aaPredicted RBP5.06□□□□□ -1.6
COL6A3-208ENST00000468792 C6orf223Q8N319 242 aa5.06□□□□□ -1.6
COL6A3-208ENST00000468792 LINC00167Q96N53 147 aa5.06□□□□□ -1.6
COL6A3-208ENST00000468792 VPS13DQ5THJ4 4388 aa5.06□□□□□ -1.6
COL6A3-208ENST00000468792 DNAH7Q8WXX0 4024 aa5.06□□□□□ -1.6
COL6A3-208ENST00000468792 STAB2Q8WWQ8 2551 aa5.05□□□□□ -1.6
COL6A3-208ENST00000468792 NDUFC2-KCTD14E9PQ53 114 aa5.05□□□□□ -1.6
COL6A3-208ENST00000468792 IGLV6-57P01721 117 aa5.05□□□□□ -1.6
COL6A3-208ENST00000468792 PRB2P02812 416 aaPredicted RBP5.05□□□□□ -1.6
COL6A3-208ENST00000468792 TLX1NBP0CAT3 122 aa5.05□□□□□ -1.6
COL6A3-208ENST00000468792 C9orf116Q5BN46 136 aaPredicted RBP5.05□□□□□ -1.6
COL6A3-208ENST00000468792 CAMK2N2Q96S95 79 aa5.05□□□□□ -1.6
COL6A3-208ENST00000468792 CDIP1Q9H305 208 aa5.05□□□□□ -1.6
COL6A3-208ENST00000468792 DNHD1Q96M86 4753 aa5.05□□□□□ -1.6
COL6A3-208ENST00000468792 TRBV7-6A0A0J9YX20 115 aa5.04□□□□□ -1.6
COL6A3-208ENST00000468792 H3BQ85 93 aa5.04□□□□□ -1.6
COL6A3-208ENST00000468792 SNCGO76070 127 aa5.04□□□□□ -1.6
COL6A3-208ENST00000468792 BAALC-AS2P0C853 105 aa5.04□□□□□ -1.6
COL6A3-208ENST00000468792 OR13C6PQ8NH95 151 aa5.04□□□□□ -1.6
COL6A3-208ENST00000468792 SVIPQ8NHG7 77 aa5.04□□□□□ -1.6
COL6A3-208ENST00000468792 MRAPQ8TCY5 172 aa5.04□□□□□ -1.6
COL6A3-208ENST00000468792 FAM218AQ96MZ4 157 aa5.04□□□□□ -1.6
COL6A3-208ENST00000468792 SIGMAR1Q99720 223 aa5.04□□□□□ -1.6
COL6A3-208ENST00000468792 IGKV2D-24A0A075B6R9 120 aa5.03□□□□□ -1.6
COL6A3-208ENST00000468792 TEX49A0A1B0GTD5 131 aa5.03□□□□□ -1.6
COL6A3-208ENST00000468792 DNAL4O96015 105 aa5.03□□□□□ -1.6
COL6A3-208ENST00000468792 ACYP1P07311 99 aa5.03□□□□□ -1.6
COL6A3-208ENST00000468792 SCGB1A1P11684 91 aa5.03□□□□□ -1.6
COL6A3-208ENST00000468792 PLA2G2DQ9UNK4 145 aa5.03□□□□□ -1.6
COL6A3-208ENST00000468792 INAFM2P0DMQ5 153 aa5.02□□□□□ -1.61
COL6A3-208ENST00000468792 SYCNQ0VAF6 134 aa5.02□□□□□ -1.61
COL6A3-208ENST00000468792 S100A7L2Q5SY68 101 aa5.02□□□□□ -1.61
COL6A3-208ENST00000468792 Q6ZRU5 148 aa5.02□□□□□ -1.61
COL6A3-208ENST00000468792 Q8NDZ9 215 aa5.02□□□□□ -1.61
COL6A3-208ENST00000468792 OBSCN-AS1Q96MR7 158 aa5.02□□□□□ -1.61
COL6A3-208ENST00000468792 C22orf24Q9Y442 160 aa5.02□□□□□ -1.61
COL6A3-208ENST00000468792 A0A087WYN8 130 aa5.01□□□□□ -1.61
COL6A3-208ENST00000468792 M0R378 163 aa5.01□□□□□ -1.61
COL6A3-208ENST00000468792 VPREB1P12018 145 aa5.01□□□□□ -1.61
COL6A3-208ENST00000468792 PRR3P79522 188 aaKnown RBP5.01□□□□□ -1.61
COL6A3-208ENST00000468792 HIGD2BQ4VC39 106 aa5.01□□□□□ -1.61
COL6A3-208ENST00000468792 Q8N814 137 aa5.01□□□□□ -1.61
COL6A3-208ENST00000468792 LINC00526Q96FQ7 95 aa5.01□□□□□ -1.61
COL6A3-208ENST00000468792 APLNQ9ULZ1 77 aa5.01□□□□□ -1.61
COL6A3-208ENST00000468792 DNAH10Q8IVF4 4471 aa5.01□□□□□ -1.61
COL6A3-208ENST00000468792 LINC00575Q6W349 94 aa5□□□□□ -1.61
COL6A3-208ENST00000468792 ORMDL1Q9P0S3 153 aa5□□□□□ -1.61
COL6A3-208ENST00000468792 PRKDCP78527 4128 aaKnown RBP5□□□□□ -1.61
COL6A3-208ENST00000468792 IGLV5-37A0A075B6J1 123 aa4.99□□□□□ -1.61
COL6A3-208ENST00000468792 TMEM256-PLSCR3K7ERE1 68 aa4.99□□□□□ -1.61
COL6A3-208ENST00000468792 LECT2O14960 151 aa4.99□□□□□ -1.61
COL6A3-208ENST00000468792 C6orf99Q4VX62 202 aa4.99□□□□□ -1.61
COL6A3-208ENST00000468792 TRAV23DV6A0A075B6W5 121 aa4.98□□□□□ -1.61
COL6A3-208ENST00000468792 NUPR2A6NF83 97 aa4.98□□□□□ -1.61
COL6A3-208ENST00000468792 USP17L23D6RBM5 183 aa4.98□□□□□ -1.61
COL6A3-208ENST00000468792 JMJD7-PLA2G4BH0Y9G9 81 aa4.98□□□□□ -1.61
COL6A3-208ENST00000468792 NCR3O14931 201 aa4.98□□□□□ -1.61
COL6A3-208ENST00000468792 RPL18AQ02543 176 aaKnown RBP4.98□□□□□ -1.61
COL6A3-208ENST00000468792 SDIM1Q6ZPB5 146 aa4.98□□□□□ -1.61
COL6A3-208ENST00000468792 Q6ZRP5 223 aa4.98□□□□□ -1.61
COL6A3-208ENST00000468792 Q9HAA7 133 aa4.98□□□□□ -1.61
COL6A3-208ENST00000468792 XAGE1AQ9HD64 81 aa4.98□□□□□ -1.61
COL6A3-208ENST00000468792 CSMD3Q7Z407 3707 aa4.98□□□□□ -1.61
COL6A3-208ENST00000468792 TRBV10-3A0A0K0K1G6 114 aa4.97□□□□□ -1.61
COL6A3-208ENST00000468792 hADV29S1A0JD25 119 aa4.97□□□□□ -1.61
COL6A3-208ENST00000468792 PCP4P48539 62 aa4.97□□□□□ -1.61
COL6A3-208ENST00000468792 KRTAP21-3Q3LHN1 58 aa4.97□□□□□ -1.61
COL6A3-208ENST00000468792 DIRC1Q969H9 104 aa4.97□□□□□ -1.61
COL6A3-208ENST00000468792 STARD9Q9P2P6 4700 aa4.96□□□□□ -1.62
COL6A3-208ENST00000468792 ZNF73O43830 326 aaPredicted RBP4.96□□□□□ -1.62
COL6A3-208ENST00000468792 SLPIP03973 132 aa4.96□□□□□ -1.62
COL6A3-208ENST00000468792 ELOF1P60002 83 aaKnown RBP4.96□□□□□ -1.62
COL6A3-208ENST00000468792 CNBPP62633 177 aaKnown RBP4.96□□□□□ -1.62
COL6A3-208ENST00000468792 C14orf177Q52M58 125 aa4.96□□□□□ -1.62
COL6A3-208ENST00000468792 TTC32Q5I0X7 151 aa4.96□□□□□ -1.62
COL6A3-208ENST00000468792 C9orf129Q5T035 196 aaKnown RBP4.96□□□□□ -1.62
COL6A3-208ENST00000468792 Q6Q795 121 aa4.96□□□□□ -1.62
COL6A3-208ENST00000468792 LYSTQ99698 3801 aa4.96□□□□□ -1.62
COL6A3-208ENST00000468792 KCNQ1DNQ9H478 68 aa4.96□□□□□ -1.62
COL6A3-208ENST00000468792 XGP55808 180 aa4.95□□□□□ -1.62
COL6A3-208ENST00000468792 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.95□□□□□ -1.62
COL6A3-208ENST00000468792 DNAH2Q9P225 4427 aa4.94□□□□□ -1.62
COL6A3-208ENST00000468792 DNAH6Q9C0G6 4158 aa4.94□□□□□ -1.62
COL6A3-208ENST00000468792 LOC107984640A0A0U1RRK4 108 aa4.94□□□□□ -1.62
COL6A3-208ENST00000468792 COX7BP24311 80 aa4.94□□□□□ -1.62
COL6A3-208ENST00000468792 GAGE2EQ4V326 116 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms