RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 IGHV3-33P01772 117 aa12.71□□□□□ -0.37
VPS33A-205ENST00000541169 HLA-DQA1P01909 254 aa12.71□□□□□ -0.37
VPS33A-205ENST00000541169 IGHV3-30-3P0DP02 117 aa12.71□□□□□ -0.37
VPS33A-205ENST00000541169 IGHV3-30-5P0DP03 117 aa12.71□□□□□ -0.37
VPS33A-205ENST00000541169 D6R8Y8 96 aa12.7□□□□□ -0.38
VPS33A-205ENST00000541169 UBE2L6O14933 153 aa12.7□□□□□ -0.38
VPS33A-205ENST00000541169 APCSP02743 223 aa12.7□□□□□ -0.38
VPS33A-205ENST00000541169 MT-ND6P03923 174 aa12.7□□□□□ -0.38
VPS33A-205ENST00000541169 RPS10P46783 165 aaKnown RBP12.7□□□□□ -0.38
VPS33A-205ENST00000541169 TMEM136Q6ZRR5 245 aa12.7□□□□□ -0.38
VPS33A-205ENST00000541169 GNB1LQ9BYB4 327 aa12.7□□□□□ -0.38
VPS33A-205ENST00000541169 VPS13DQ5THJ4 4388 aa12.69□□□□□ -0.38
VPS33A-205ENST00000541169 A0A1B0GUV1 79 aa12.69□□□□□ -0.38
VPS33A-205ENST00000541169 TNFRSF6BO95407 300 aa12.69□□□□□ -0.38
VPS33A-205ENST00000541169 SMAGPQ0VAQ4 97 aa12.69□□□□□ -0.38
VPS33A-205ENST00000541169 Q0VG73 95 aa12.69□□□□□ -0.38
VPS33A-205ENST00000541169 SLC7A5P1Q8MH63 180 aa12.69□□□□□ -0.38
VPS33A-205ENST00000541169 COX11Q9Y6N1 276 aa12.69□□□□□ -0.38
VPS33A-205ENST00000541169 SACSQ9NZJ4 4579 aa12.69□□□□□ -0.38
VPS33A-205ENST00000541169 SMKR1H3BMG3 65 aa12.68□□□□□ -0.38
VPS33A-205ENST00000541169 RTL8CO15255 209 aa12.68□□□□□ -0.38
VPS33A-205ENST00000541169 RMI2Q96E14 147 aa12.68□□□□□ -0.38
VPS33A-205ENST00000541169 PRELID3AQ96N28 172 aa12.68□□□□□ -0.38
VPS33A-205ENST00000541169 RYR2Q92736 4967 aa12.67□□□□□ -0.38
VPS33A-205ENST00000541169 GAS8-AS1O95177 125 aa12.67□□□□□ -0.38
VPS33A-205ENST00000541169 FCER1GP30273 86 aa12.67□□□□□ -0.38
VPS33A-205ENST00000541169 TM2D2Q9BX73 214 aa12.67□□□□□ -0.38
VPS33A-205ENST00000541169 PRSS29PA6NIE9 313 aa12.66□□□□□ -0.38
VPS33A-205ENST00000541169 PRSS47A8MTI9 375 aa12.66□□□□□ -0.38
VPS33A-205ENST00000541169 KMT2AQ03164 3969 aa12.65□□□□□ -0.38
VPS33A-205ENST00000541169 TSHBP01222 138 aa12.65□□□□□ -0.38
VPS33A-205ENST00000541169 ZNF25P17030 456 aaPredicted RBP12.65□□□□□ -0.38
VPS33A-205ENST00000541169 MPV17L2Q567V2 206 aa12.65□□□□□ -0.38
VPS33A-205ENST00000541169 ATRAIDQ6UW56 229 aa12.65□□□□□ -0.38
VPS33A-205ENST00000541169 TMEM18Q96B42 140 aa12.65□□□□□ -0.38
VPS33A-205ENST00000541169 K7EMI3 77 aa12.64□□□□□ -0.39
VPS33A-205ENST00000541169 CRPP02741 224 aa12.64□□□□□ -0.39
VPS33A-205ENST00000541169 ANGP03950 147 aaKnown RBP12.64□□□□□ -0.39
VPS33A-205ENST00000541169 RBX1P62877 108 aa12.64□□□□□ -0.39
VPS33A-205ENST00000541169 GAGE6Q13070 117 aa12.64□□□□□ -0.39
VPS33A-205ENST00000541169 SMIM2Q9BVW6 85 aa12.64□□□□□ -0.39
VPS33A-205ENST00000541169 KLK12Q9UKR0 248 aa12.64□□□□□ -0.39
VPS33A-205ENST00000541169 NPYP01303 97 aa12.63□□□□□ -0.39
VPS33A-205ENST00000541169 ESDP10768 282 aa12.63□□□□□ -0.39
VPS33A-205ENST00000541169 AMMECR1LQ6DCA0 310 aa12.63□□□□□ -0.39
VPS33A-205ENST00000541169 MAP1LC3AQ9H492 121 aa12.63□□□□□ -0.39
VPS33A-205ENST00000541169 RYR3Q15413 4870 aa12.62□□□□□ -0.39
VPS33A-205ENST00000541169 RAB5AP20339 215 aa12.62□□□□□ -0.39
VPS33A-205ENST00000541169 MIAQ16674 131 aa12.62□□□□□ -0.39
VPS33A-205ENST00000541169 Q6ZRN7 208 aaPredicted RBP12.62□□□□□ -0.39
VPS33A-205ENST00000541169 SMCO4Q9NRQ5 59 aa12.62□□□□□ -0.39
VPS33A-205ENST00000541169 HYDINQ4G0P3 5121 aa12.62□□□□□ -0.39
VPS33A-205ENST00000541169 EREGO14944 169 aa12.61□□□□□ -0.39
VPS33A-205ENST00000541169 PSCAO43653 123 aa12.61□□□□□ -0.39
VPS33A-205ENST00000541169 TMEM101Q96IK0 257 aa12.61□□□□□ -0.39
VPS33A-205ENST00000541169 PRR34Q9NV39 138 aa12.61□□□□□ -0.39
VPS33A-205ENST00000541169 MRPL52Q86TS9 123 aaKnown RBP12.6□□□□□ -0.39
VPS33A-205ENST00000541169 Q8N3U1 123 aa12.6□□□□□ -0.39
VPS33A-205ENST00000541169 Q8N976 141 aa12.6□□□□□ -0.39
VPS33A-205ENST00000541169 UBE2WQ96B02 151 aa12.6□□□□□ -0.39
VPS33A-205ENST00000541169 Q9HAA7 133 aa12.6□□□□□ -0.39
VPS33A-205ENST00000541169 NXT2Q9NPJ8 142 aaKnown RBP12.6□□□□□ -0.39
VPS33A-205ENST00000541169 CSDC2Q9Y534 153 aaKnown RBP12.6□□□□□ -0.39
VPS33A-205ENST00000541169 TRAV8-4A0A0B4J246 113 aa12.59□□□□□ -0.39
VPS33A-205ENST00000541169 FGF6P10767 208 aa12.59□□□□□ -0.39
VPS33A-205ENST00000541169 G0S2P27469 103 aa12.59□□□□□ -0.39
VPS33A-205ENST00000541169 DNAH6Q9C0G6 4158 aa12.59□□□□□ -0.39
VPS33A-205ENST00000541169 TGIF2-C20orf24A0A0A6YYL0 155 aa12.58□□□□□ -0.4
VPS33A-205ENST00000541169 LINC00269Q8N2A0 174 aa12.58□□□□□ -0.4
VPS33A-205ENST00000541169 MRPL18Q9H0U6 180 aaKnown RBP12.58□□□□□ -0.4
VPS33A-205ENST00000541169 REG3AQ06141 175 aa12.57□□□□□ -0.4
VPS33A-205ENST00000541169 FABP9Q0Z7S8 132 aa12.57□□□□□ -0.4
VPS33A-205ENST00000541169 RNASEKQ6P5S7 137 aaKnown RBP12.57□□□□□ -0.4
VPS33A-205ENST00000541169 Q8N8P6 123 aa12.57□□□□□ -0.4
VPS33A-205ENST00000541169 DEFB104AQ8WTQ1 72 aa12.57□□□□□ -0.4
VPS33A-205ENST00000541169 TIMM21Q9BVV7 248 aa12.57□□□□□ -0.4
VPS33A-205ENST00000541169 C1orf43Q9BWL3 253 aa12.57□□□□□ -0.4
VPS33A-205ENST00000541169 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.56□□□□□ -0.4
VPS33A-205ENST00000541169 IGKV2-29A2NJV5 120 aaPredicted RBP12.56□□□□□ -0.4
VPS33A-205ENST00000541169 TNP2Q05952 138 aa12.56□□□□□ -0.4
VPS33A-205ENST00000541169 ORMDL2Q53FV1 153 aa12.56□□□□□ -0.4
VPS33A-205ENST00000541169 DGAT2L7PQ6IED9 249 aa12.56□□□□□ -0.4
VPS33A-205ENST00000541169 ENHOQ6UWT2 76 aa12.56□□□□□ -0.4
VPS33A-205ENST00000541169 C20orf203Q8NBC4 194 aa12.56□□□□□ -0.4
VPS33A-205ENST00000541169 OR5A1Q8NGJ0 315 aa12.56□□□□□ -0.4
VPS33A-205ENST00000541169 TRAPPC1Q9Y5R8 145 aa12.56□□□□□ -0.4
VPS33A-205ENST00000541169 IGLV4-60A0A075B6I1 120 aa12.54□□□□□ -0.4
VPS33A-205ENST00000541169 IGKV2D-24A0A075B6R9 120 aa12.54□□□□□ -0.4
VPS33A-205ENST00000541169 YPEL4Q96NS1 127 aa12.54□□□□□ -0.4
VPS33A-205ENST00000541169 ALKBH7Q9BT30 221 aaPredicted RBP12.54□□□□□ -0.4
VPS33A-205ENST00000541169 LINC01549A6NIU2 74 aa12.53□□□□□ -0.4
VPS33A-205ENST00000541169 CCL25O15444 150 aa12.53□□□□□ -0.4
VPS33A-205ENST00000541169 KIAA1644Q3SXP7 199 aa12.53□□□□□ -0.4
VPS33A-205ENST00000541169 SPANXA1Q9NS26 97 aa12.53□□□□□ -0.4
VPS33A-205ENST00000541169 LOC389332A0A1B0GUA5 103 aa12.52□□□□□ -0.41
VPS33A-205ENST00000541169 A0A1B0GVY2 172 aa12.52□□□□□ -0.41
VPS33A-205ENST00000541169 PRSS3P2Q8NHM4 247 aa12.52□□□□□ -0.41
VPS33A-205ENST00000541169 UBE2D4Q9Y2X8 147 aa12.52□□□□□ -0.41
VPS33A-205ENST00000541169 A0A087WTM6 91 aa12.51□□□□□ -0.41
VPS33A-205ENST00000541169 ZNF664Q8N3J9 261 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms