RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 MAP1LC3AQ9H492 121 aa5.86□□□□□ -1.47
VPS39-213ENST00000570062 ANK2Q01484 3957 aa5.85□□□□□ -1.47
VPS39-213ENST00000570062 TRAV12-2A0A075B6T6 113 aa5.85□□□□□ -1.47
VPS39-213ENST00000570062 KIR2DL5BA0A0G2JN68 375 aa5.85□□□□□ -1.47
VPS39-213ENST00000570062 KIR2DL5BA0A0G2JPC4 375 aa5.85□□□□□ -1.47
VPS39-213ENST00000570062 A8MWV9 139 aa5.85□□□□□ -1.47
VPS39-213ENST00000570062 D6R8Y8 96 aa5.85□□□□□ -1.47
VPS39-213ENST00000570062 H7C1H1 209 aa5.85□□□□□ -1.47
VPS39-213ENST00000570062 M0R2P5 195 aa5.85□□□□□ -1.47
VPS39-213ENST00000570062 SERF1AO75920 110 aa5.85□□□□□ -1.47
VPS39-213ENST00000570062 PRB4P10163 310 aaPredicted RBP5.85□□□□□ -1.47
VPS39-213ENST00000570062 FABP4P15090 132 aa5.85□□□□□ -1.47
VPS39-213ENST00000570062 MRPL51Q4U2R6 128 aaKnown RBP5.85□□□□□ -1.47
VPS39-213ENST00000570062 NIT1Q86X76 327 aa5.85□□□□□ -1.47
VPS39-213ENST00000570062 AMN1Q8IY45 258 aa5.85□□□□□ -1.47
VPS39-213ENST00000570062 KIR2DL5AQ8N109 375 aa5.85□□□□□ -1.47
VPS39-213ENST00000570062 POM121L12Q8N7R1 296 aa5.85□□□□□ -1.47
VPS39-213ENST00000570062 KIR2DL5BQ8NHK3 375 aa5.85□□□□□ -1.47
VPS39-213ENST00000570062 AP5S1Q9NUS5 200 aa5.85□□□□□ -1.47
VPS39-213ENST00000570062 SELENOKQ9Y6D0 94 aa5.85□□□□□ -1.47
VPS39-213ENST00000570062 SMIM9A6NGZ8 99 aa5.84□□□□□ -1.47
VPS39-213ENST00000570062 RHODO00212 210 aa5.84□□□□□ -1.47
VPS39-213ENST00000570062 AMTP48728 403 aa5.84□□□□□ -1.47
VPS39-213ENST00000570062 APOC4P55056 127 aa5.84□□□□□ -1.47
VPS39-213ENST00000570062 IQCJQ1A5X6 159 aa5.84□□□□□ -1.47
VPS39-213ENST00000570062 LGALS9BQ3B8N2 356 aa5.84□□□□□ -1.47
VPS39-213ENST00000570062 KRTAP24-1Q3LI83 254 aa5.84□□□□□ -1.47
VPS39-213ENST00000570062 OR10D4PQ8NGN7 298 aa5.84□□□□□ -1.47
VPS39-213ENST00000570062 CSTL1Q9H114 145 aa5.84□□□□□ -1.47
VPS39-213ENST00000570062 HSPB8Q9UJY1 196 aa5.84□□□□□ -1.47
VPS39-213ENST00000570062 TIMM8BQ9Y5J9 83 aaPredicted RBP5.84□□□□□ -1.47
VPS39-213ENST00000570062 PKD1L1Q8TDX9 2849 aa5.83□□□□□ -1.48
VPS39-213ENST00000570062 RBMY1BA6NDE4 496 aaKnown RBP5.83□□□□□ -1.48
VPS39-213ENST00000570062 RBMY1EA6NEQ0 496 aaKnown RBP5.83□□□□□ -1.48
VPS39-213ENST00000570062 TNFRSF6BO95407 300 aa5.83□□□□□ -1.48
VPS39-213ENST00000570062 RBMY1DP0C7P1 496 aaKnown RBP5.83□□□□□ -1.48
VPS39-213ENST00000570062 EVI2AP22794 236 aa5.83□□□□□ -1.48
VPS39-213ENST00000570062 SSTP61278 116 aa5.83□□□□□ -1.48
VPS39-213ENST00000570062 RPL32P62910 135 aaKnown RBP5.83□□□□□ -1.48
VPS39-213ENST00000570062 KIR3DS1Q14943 382 aa5.83□□□□□ -1.48
VPS39-213ENST00000570062 JOSD1Q15040 202 aaPredicted RBP5.83□□□□□ -1.48
VPS39-213ENST00000570062 ZNF876PQ49A33 203 aa5.83□□□□□ -1.48
VPS39-213ENST00000570062 PRR31Q5SQ13 230 aa5.83□□□□□ -1.48
VPS39-213ENST00000570062 RNASEKQ6P5S7 137 aaKnown RBP5.83□□□□□ -1.48
VPS39-213ENST00000570062 LINC00518Q8N0U6 118 aa5.83□□□□□ -1.48
VPS39-213ENST00000570062 TMEM263Q8WUH6 116 aaKnown RBP5.83□□□□□ -1.48
VPS39-213ENST00000570062 RNF185Q96GF1 192 aa5.83□□□□□ -1.48
VPS39-213ENST00000570062 C16orf74Q96GX8 76 aa5.83□□□□□ -1.48
VPS39-213ENST00000570062 RCHY1Q96PM5 261 aa5.83□□□□□ -1.48
VPS39-213ENST00000570062 MSRB1Q9NZV6 116 aa5.83□□□□□ -1.48
VPS39-213ENST00000570062 C20orf202A1L168 122 aa5.82□□□□□ -1.48
VPS39-213ENST00000570062 LINC01546A6NGU7 62 aa5.82□□□□□ -1.48
VPS39-213ENST00000570062 S100A12P80511 92 aa5.82□□□□□ -1.48
VPS39-213ENST00000570062 DAZ2Q13117 558 aaKnown RBP5.82□□□□□ -1.48
VPS39-213ENST00000570062 PDZD11Q5EBL8 140 aa5.82□□□□□ -1.48
VPS39-213ENST00000570062 ZFP2Q6ZN57 461 aa5.82□□□□□ -1.48
VPS39-213ENST00000570062 C14orf178Q8N769 122 aaPredicted RBP5.82□□□□□ -1.48
VPS39-213ENST00000570062 Q8N8P6 123 aa5.82□□□□□ -1.48
VPS39-213ENST00000570062 RASL10AQ92737 203 aa5.82□□□□□ -1.48
VPS39-213ENST00000570062 EDA2RQ9HAV5 297 aa5.82□□□□□ -1.48
VPS39-213ENST00000570062 MDFICQ9P1T7 246 aa5.82□□□□□ -1.48
VPS39-213ENST00000570062 XCL2Q9UBD3 114 aa5.82□□□□□ -1.48
VPS39-213ENST00000570062 MUC21A0A0G2JKD1 596 aa5.81□□□□□ -1.48
VPS39-213ENST00000570062 TRBV6-5A0A0K0K1A5 114 aa5.81□□□□□ -1.48
VPS39-213ENST00000570062 MUC21A0A140T8X8 626 aa5.81□□□□□ -1.48
VPS39-213ENST00000570062 IFITM10A6NMD0 228 aa5.81□□□□□ -1.48
VPS39-213ENST00000570062 VCYO14598 125 aa5.81□□□□□ -1.48
VPS39-213ENST00000570062 LEPROTL1O95214 131 aa5.81□□□□□ -1.48
VPS39-213ENST00000570062 FXYD7P58549 80 aa5.81□□□□□ -1.48
VPS39-213ENST00000570062 LINC00310P59036 64 aa5.81□□□□□ -1.48
VPS39-213ENST00000570062 RRN3P1Q2M238 152 aa5.81□□□□□ -1.48
VPS39-213ENST00000570062 ORMDL2Q53FV1 153 aa5.81□□□□□ -1.48
VPS39-213ENST00000570062 HIST2H2BDQ6DRA6 164 aa5.81□□□□□ -1.48
VPS39-213ENST00000570062 Q6ZQT7 251 aa5.81□□□□□ -1.48
VPS39-213ENST00000570062 C12orf57Q99622 126 aa5.81□□□□□ -1.48
VPS39-213ENST00000570062 MAP1LC3CQ9BXW4 147 aa5.81□□□□□ -1.48
VPS39-213ENST00000570062 KRTAP9-3Q9BYQ3 159 aa5.81□□□□□ -1.48
VPS39-213ENST00000570062 KIF25-AS1Q9Y6Z4 181 aa5.81□□□□□ -1.48
VPS39-213ENST00000570062 TGP01266 2768 aa5.81□□□□□ -1.48
VPS39-213ENST00000570062 F5H697 171 aa5.8□□□□□ -1.48
VPS39-213ENST00000570062 HBDP02042 147 aa5.8□□□□□ -1.48
VPS39-213ENST00000570062 MGPP08493 103 aa5.8□□□□□ -1.48
VPS39-213ENST00000570062 HTN1P15515 57 aa5.8□□□□□ -1.48
VPS39-213ENST00000570062 SUMO2P61956 95 aaKnown RBP5.8□□□□□ -1.48
VPS39-213ENST00000570062 PMCHL1Q16048 86 aa5.8□□□□□ -1.48
VPS39-213ENST00000570062 ZNF705AQ6ZN79 300 aaPredicted RBP5.8□□□□□ -1.48
VPS39-213ENST00000570062 C1orf158Q8N1D5 194 aa5.8□□□□□ -1.48
VPS39-213ENST00000570062 DNAJC30Q96LL9 226 aa5.8□□□□□ -1.48
VPS39-213ENST00000570062 ST20Q9HBF5 79 aa5.8□□□□□ -1.48
VPS39-213ENST00000570062 NOTCH1P46531 2555 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 MEGF8Q7Z7M0 2845 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 LOC389332A0A1B0GUA5 103 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 A8MZ25 164 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 NUPR1O60356 82 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 ATP5LO75964 103 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 SCGB1D1O95968 90 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 NPYP01303 97 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 CRYGDP07320 174 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 RBMY1A1P0DJD3 496 aaKnown RBP5.79□□□□□ -1.48
VPS39-213ENST00000570062 RBMY1CP0DJD4 496 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms