RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 CYCSP99999 105 aaKnown RBP5.9□□□□□ -1.46
VPS53-214ENST00000572607 BAXQ07812 192 aa5.9□□□□□ -1.46
VPS53-214ENST00000572607 RAB32Q13637 225 aa5.9□□□□□ -1.46
VPS53-214ENST00000572607 CEMP1Q6PRD7 247 aaPredicted RBP5.9□□□□□ -1.46
VPS53-214ENST00000572607 NRARPQ7Z6K4 114 aa5.9□□□□□ -1.46
VPS53-214ENST00000572607 UQCC1Q9NVA1 299 aa5.9□□□□□ -1.46
VPS53-214ENST00000572607 CLEC5AQ9NY25 188 aa5.9□□□□□ -1.46
VPS53-214ENST00000572607 IGHV4-28A0A0C4DH34 117 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 UBE2L5PA0A1B0GUS4 154 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 ZNF705EA8MWA4 302 aaPredicted RBP5.89□□□□□ -1.47
VPS53-214ENST00000572607 E5RGE8 158 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 DEFB4AO15263 64 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 DUSP14O95147 198 aaKnown RBP5.89□□□□□ -1.47
VPS53-214ENST00000572607 PSG9Q00887 426 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 EWSR1Q01844 656 aaKnown RBP eCLIP5.89□□□□□ -1.47
VPS53-214ENST00000572607 ARL16Q0P5N6 197 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 ATP6V1FQ16864 119 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 C10orf113Q5VZT2 155 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 LINC00305Q7Z4B0 112 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 TMEM252Q8N6L7 170 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 OR1L4Q8NGR5 311 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 PHLDA1Q8WV24 401 aaPredicted RBP5.89□□□□□ -1.47
VPS53-214ENST00000572607 UHRF2Q96PU4 802 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 PFDN5Q99471 154 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 MGST2Q99735 147 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 KRTAP9-3Q9BYQ3 159 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 NMES1Q9C002 83 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 SLC25A31Q9H0C2 315 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 XCL2Q9UBD3 114 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 GOLT1BQ9Y3E0 138 aa5.89□□□□□ -1.47
VPS53-214ENST00000572607 A0A0J9YX75 114 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 SIX6O95475 246 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 GIG44P09565 113 aaPredicted RBP5.88□□□□□ -1.47
VPS53-214ENST00000572607 PET100P0DJ07 73 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 CXCL2P19875 107 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 FXYD7P58549 80 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 DEFB1P60022 68 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 NANOS2P60321 138 aaKnown RBP5.88□□□□□ -1.47
VPS53-214ENST00000572607 IFITM3Q01628 133 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 LRRC37A5PQ49AS3 106 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 GDF5OSQ5U4N7 250 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 FAM78BQ5VT40 261 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 BPIFA4PQ86YQ2 179 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 Q8NAQ8 132 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 ZNF738Q8NE65 137 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 CLUHP3Q96NS8 147 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 MARVELD1Q9BSK0 173 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 HRH4Q9H3N8 390 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 C11orf1Q9H5F2 150 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 PPP1R14DQ9NXH3 145 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 WDR83OSQ9Y284 106 aa5.88□□□□□ -1.47
VPS53-214ENST00000572607 IGHV3OR16-12A0A075B7B8 117 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 A0A087X0K7 114 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 IGSF23A1L1A6 192 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 TMEM189A5PLL7 270 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 SMIM9A6NGZ8 99 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 C11orf94C9JXX5 98 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 F6UB75 175 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 MPDU1O75352 247 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 AMBPP02760 352 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 FGF7P21781 194 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 B2MP61769 119 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 IL15RAQ13261 267 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 VWC2Q2TAL6 325 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 MIC13Q5XKP0 118 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 LCN15Q6UWW0 184 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 CSNK1G2-AS1Q8NCQ2 148 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 C20orf173Q96LM9 149 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 SLC50A1Q9BRV3 221 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 TMEM208Q9BTX3 173 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 DNAJC4Q9NNZ3 241 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 KCNIP2Q9NS61 270 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 X6R8D5 127 aa5.87□□□□□ -1.47
VPS53-214ENST00000572607 TRAV8-2A0A0B4J237 113 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 LY6G6CO95867 125 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 INSP01308 110 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 HBE1P02100 147 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 RBMY1A1P0DJD3 496 aaKnown RBP5.86□□□□□ -1.47
VPS53-214ENST00000572607 RBMY1CP0DJD4 496 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 CXCL3P19876 107 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 RPL29P47914 159 aaKnown RBP5.86□□□□□ -1.47
VPS53-214ENST00000572607 CNN1P51911 297 aaKnown RBP5.86□□□□□ -1.47
VPS53-214ENST00000572607 RHOBP62745 196 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 HIST1H1AQ02539 215 aaPredicted RBP5.86□□□□□ -1.47
VPS53-214ENST00000572607 OPCMLQ14982 345 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 RBMY1FQ15415 496 aaKnown RBP5.86□□□□□ -1.47
VPS53-214ENST00000572607 PSG3Q16557 428 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 IGFL4Q6B9Z1 124 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 PATE2Q6UY27 113 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 ZNF705AQ6ZN79 300 aaPredicted RBP5.86□□□□□ -1.47
VPS53-214ENST00000572607 RNF182Q8N6D2 247 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 ZNF709Q8N972 641 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 OR5C1Q8NGR4 320 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 C2CD4CQ8TF44 421 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 NEU1Q99519 415 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 SLC35B3Q9H1N7 401 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 SLC39A9Q9NUM3 307 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 RFNGQ9Y644 331 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 PXMP4Q9Y6I8 212 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms