RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 OR11H12B2RN74 326 aa12.64□□□□□ -0.39
COL7A1-202ENST00000422991 UMAD1C9J7I0 102 aa12.64□□□□□ -0.39
COL7A1-202ENST00000422991 ISLRO14498 428 aa12.64□□□□□ -0.39
COL7A1-202ENST00000422991 OR7C2O60412 319 aa12.64□□□□□ -0.39
COL7A1-202ENST00000422991 SNRPCP09234 159 aaKnown RBP12.64□□□□□ -0.39
COL7A1-202ENST00000422991 ZNF688P0C7X2 276 aa12.64□□□□□ -0.39
COL7A1-202ENST00000422991 HIST1H1EP10412 219 aaKnown RBP12.64□□□□□ -0.39
COL7A1-202ENST00000422991 ZNF726P1Q15940 193 aa12.64□□□□□ -0.39
COL7A1-202ENST00000422991 RAB24Q969Q5 203 aa12.64□□□□□ -0.39
COL7A1-202ENST00000422991 FXYD5Q96DB9 178 aa12.64□□□□□ -0.39
COL7A1-202ENST00000422991 PAXXQ9BUH6 204 aa12.64□□□□□ -0.39
COL7A1-202ENST00000422991 ACTR3CQ9C0K3 210 aaPredicted RBP12.64□□□□□ -0.39
COL7A1-202ENST00000422991 OR51M1Q9H341 326 aa12.64□□□□□ -0.39
COL7A1-202ENST00000422991 TRAV8-2A0A0B4J237 113 aa12.63□□□□□ -0.39
COL7A1-202ENST00000422991 CTXND1A0A1B0GTU2 59 aa12.63□□□□□ -0.39
COL7A1-202ENST00000422991 H3BTX0 84 aa12.63□□□□□ -0.39
COL7A1-202ENST00000422991 SLC17A3O00476 420 aa12.63□□□□□ -0.39
COL7A1-202ENST00000422991 STAG3L2P0CL84 134 aa12.63□□□□□ -0.39
COL7A1-202ENST00000422991 STAG3L3P0CL85 134 aa12.63□□□□□ -0.39
COL7A1-202ENST00000422991 ID1P41134 155 aa12.63□□□□□ -0.39
COL7A1-202ENST00000422991 CMC4P56277 68 aaPredicted RBP12.63□□□□□ -0.39
COL7A1-202ENST00000422991 SNRPD3P62318 126 aaKnown RBP12.63□□□□□ -0.39
COL7A1-202ENST00000422991 GUK1Q16774 197 aa12.63□□□□□ -0.39
COL7A1-202ENST00000422991 EIF5AL1Q6IS14 154 aaKnown RBP12.63□□□□□ -0.39
COL7A1-202ENST00000422991 PQLC2Q6ZP29 291 aa12.63□□□□□ -0.39
COL7A1-202ENST00000422991 C16orf92Q96LL3 132 aa12.63□□□□□ -0.39
COL7A1-202ENST00000422991 ZNF586Q9NXT0 402 aa12.63□□□□□ -0.39
COL7A1-202ENST00000422991 TRBV19A0A075B6N1 114 aa12.62□□□□□ -0.39
COL7A1-202ENST00000422991 HMGB3O15347 200 aaKnown RBP12.62□□□□□ -0.39
COL7A1-202ENST00000422991 OR10J4P0C629 311 aa12.62□□□□□ -0.39
COL7A1-202ENST00000422991 ARL14EPLP0DKL9 152 aa12.62□□□□□ -0.39
COL7A1-202ENST00000422991 DEFB131AP59861 70 aa12.62□□□□□ -0.39
COL7A1-202ENST00000422991 UBE2L3P68036 154 aaKnown RBP12.62□□□□□ -0.39
COL7A1-202ENST00000422991 PSMG4Q5JS54 123 aa12.62□□□□□ -0.39
COL7A1-202ENST00000422991 DEFB125Q8N687 156 aa12.62□□□□□ -0.39
COL7A1-202ENST00000422991 RNF141Q8WVD5 230 aa12.62□□□□□ -0.39
COL7A1-202ENST00000422991 SAT2Q96F10 170 aaPredicted RBP12.62□□□□□ -0.39
COL7A1-202ENST00000422991 SLC50A1Q9BRV3 221 aa12.62□□□□□ -0.39
COL7A1-202ENST00000422991 ZNF331Q9NQX6 463 aaPredicted RBP12.62□□□□□ -0.39
COL7A1-202ENST00000422991 ZNF253O75346 499 aa12.61□□□□□ -0.39
COL7A1-202ENST00000422991 FHITP49789 147 aa12.61□□□□□ -0.39
COL7A1-202ENST00000422991 PDE6HQ13956 83 aa12.61□□□□□ -0.39
COL7A1-202ENST00000422991 IGFL4Q6B9Z1 124 aa12.61□□□□□ -0.39
COL7A1-202ENST00000422991 DPPA3Q6W0C5 159 aa12.61□□□□□ -0.39
COL7A1-202ENST00000422991 APRG1Q8IVJ8 170 aa12.61□□□□□ -0.39
COL7A1-202ENST00000422991 C20orf173Q96LM9 149 aa12.61□□□□□ -0.39
COL7A1-202ENST00000422991 NDUFB4O95168 129 aa12.6□□□□□ -0.39
COL7A1-202ENST00000422991 NBEAP1P0C6P0 100 aa12.6□□□□□ -0.39
COL7A1-202ENST00000422991 IGHV4-30-4P0DP06 118 aa12.6□□□□□ -0.39
COL7A1-202ENST00000422991 ZNF124Q15973 351 aa12.6□□□□□ -0.39
COL7A1-202ENST00000422991 RNF182Q8N6D2 247 aa12.6□□□□□ -0.39
COL7A1-202ENST00000422991 FAM213BQ8TBF2 198 aa12.6□□□□□ -0.39
COL7A1-202ENST00000422991 LRRC20Q8TCA0 184 aa12.6□□□□□ -0.39
COL7A1-202ENST00000422991 BLNKQ8WV28 456 aa12.6□□□□□ -0.39
COL7A1-202ENST00000422991 PHYHIPLQ96FC7 376 aa12.6□□□□□ -0.39
COL7A1-202ENST00000422991 LINC00052Q96N35 136 aa12.6□□□□□ -0.39
COL7A1-202ENST00000422991 CITED4Q96RK1 184 aa12.6□□□□□ -0.39
COL7A1-202ENST00000422991 MAP1LC3B2A6NCE7 125 aa12.59□□□□□ -0.39
COL7A1-202ENST00000422991 A8MZ25 164 aa12.59□□□□□ -0.39
COL7A1-202ENST00000422991 CXorf1O96002 111 aa12.59□□□□□ -0.39
COL7A1-202ENST00000422991 GCHFRP30047 84 aa12.59□□□□□ -0.39
COL7A1-202ENST00000422991 SULT1A2P50226 295 aa12.59□□□□□ -0.39
COL7A1-202ENST00000422991 MRAPQ8TCY5 172 aa12.59□□□□□ -0.39
COL7A1-202ENST00000422991 MAP1LC3BQ9GZQ8 125 aa12.59□□□□□ -0.39
COL7A1-202ENST00000422991 SRD5A3Q9H8P0 318 aa12.59□□□□□ -0.39
COL7A1-202ENST00000422991 HLA-DMBP28068 263 aa12.58□□□□□ -0.4
COL7A1-202ENST00000422991 RAB5CP51148 216 aa12.58□□□□□ -0.4
COL7A1-202ENST00000422991 SUN5Q8TC36 379 aa12.58□□□□□ -0.4
COL7A1-202ENST00000422991 PSG9Q00887 426 aa12.57□□□□□ -0.4
COL7A1-202ENST00000422991 PSG3Q16557 428 aa12.57□□□□□ -0.4
COL7A1-202ENST00000422991 FAM74A1Q5RGS3 127 aa12.57□□□□□ -0.4
COL7A1-202ENST00000422991 ALKAL2Q6UX46 152 aa12.57□□□□□ -0.4
COL7A1-202ENST00000422991 TUBA4BQ9H853 241 aa12.57□□□□□ -0.4
COL7A1-202ENST00000422991 CLEC5AQ9NY25 188 aa12.57□□□□□ -0.4
COL7A1-202ENST00000422991 KNCNA6PVL3 124 aa12.56□□□□□ -0.4
COL7A1-202ENST00000422991 FGF8P55075 233 aaPredicted RBP12.56□□□□□ -0.4
COL7A1-202ENST00000422991 DEFB1P60022 68 aa12.56□□□□□ -0.4
COL7A1-202ENST00000422991 ZNF738Q8NE65 137 aa12.56□□□□□ -0.4
COL7A1-202ENST00000422991 MBD3L1Q8WWY6 194 aa12.56□□□□□ -0.4
COL7A1-202ENST00000422991 TMEM167BQ9NRX6 74 aa12.56□□□□□ -0.4
COL7A1-202ENST00000422991 AGRNO00468 2067 aa12.55□□□□□ -0.4
COL7A1-202ENST00000422991 RBMY1BA6NDE4 496 aaKnown RBP12.55□□□□□ -0.4
COL7A1-202ENST00000422991 RBMY1EA6NEQ0 496 aaKnown RBP12.55□□□□□ -0.4
COL7A1-202ENST00000422991 RBMY1DP0C7P1 496 aaKnown RBP12.55□□□□□ -0.4
COL7A1-202ENST00000422991 FRMD6-AS1P0C7T7 363 aa12.55□□□□□ -0.4
COL7A1-202ENST00000422991 DEFB121Q5J5C9 76 aa12.55□□□□□ -0.4
COL7A1-202ENST00000422991 ACTL10Q5JWF8 245 aa12.55□□□□□ -0.4
COL7A1-202ENST00000422991 FOXI2Q6ZQN5 318 aa12.55□□□□□ -0.4
COL7A1-202ENST00000422991 IQCF2Q8IXL9 164 aa12.55□□□□□ -0.4
COL7A1-202ENST00000422991 EXOC3-AS1Q8N2X6 119 aa12.55□□□□□ -0.4
COL7A1-202ENST00000422991 SAV1Q9H4B6 383 aaPredicted RBP12.55□□□□□ -0.4
COL7A1-202ENST00000422991 AAMDCQ9H7C9 122 aa12.55□□□□□ -0.4
COL7A1-202ENST00000422991 F6UB75 175 aa12.54□□□□□ -0.4
COL7A1-202ENST00000422991 H2AFB1P0C5Y9 115 aa12.54□□□□□ -0.4
COL7A1-202ENST00000422991 HLA-DRB4P13762 266 aa12.54□□□□□ -0.4
COL7A1-202ENST00000422991 RANP62826 216 aaKnown RBP12.54□□□□□ -0.4
COL7A1-202ENST00000422991 ICAM4Q14773 271 aa12.54□□□□□ -0.4
COL7A1-202ENST00000422991 GDF5OSQ5U4N7 250 aa12.54□□□□□ -0.4
COL7A1-202ENST00000422991 LINC00322Q6ZN03 302 aaPredicted RBP12.54□□□□□ -0.4
COL7A1-202ENST00000422991 LYPD1Q8N2G4 141 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms