RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 LYZP61626 148 aa15.51■□□□□ 0.07
VPS53-210ENST00000571456 C1orf194Q5T5A4 169 aa15.51■□□□□ 0.07
VPS53-210ENST00000571456 PBDC1Q9BVG4 233 aa15.51■□□□□ 0.07
VPS53-210ENST00000571456 PARD6GQ9BYG4 376 aaPredicted RBP15.51■□□□□ 0.07
VPS53-210ENST00000571456 FBXL17Q9UF56 701 aa15.51■□□□□ 0.07
VPS53-210ENST00000571456 LYSTQ99698 3801 aa15.5■□□□□ 0.07
VPS53-210ENST00000571456 IFNA5P01569 189 aa15.5■□□□□ 0.07
VPS53-210ENST00000571456 LINC00869P0C866 280 aa15.5■□□□□ 0.07
VPS53-210ENST00000571456 NHLRC4P0CG21 123 aaPredicted RBP15.5■□□□□ 0.07
VPS53-210ENST00000571456 RPL29P47914 159 aaKnown RBP15.5■□□□□ 0.07
VPS53-210ENST00000571456 OR2F1Q13607 317 aa15.5■□□□□ 0.07
VPS53-210ENST00000571456 Q6ZRG5 221 aa15.5■□□□□ 0.07
VPS53-210ENST00000571456 TMEM61Q8N0U2 210 aa15.5■□□□□ 0.07
VPS53-210ENST00000571456 MGST2Q99735 147 aa15.5■□□□□ 0.07
VPS53-210ENST00000571456 DNAH7Q8WXX0 4024 aa15.5■□□□□ 0.07
VPS53-210ENST00000571456 TRAV2A0A0B4J234 112 aa15.49■□□□□ 0.07
VPS53-210ENST00000571456 BUB3O43684 328 aa15.49■□□□□ 0.07
VPS53-210ENST00000571456 FGF7P21781 194 aa15.49■□□□□ 0.07
VPS53-210ENST00000571456 PAFAH1B2P68402 229 aa15.49■□□□□ 0.07
VPS53-210ENST00000571456 ZNF266Q14584 549 aa15.49■□□□□ 0.07
VPS53-210ENST00000571456 CLINT1Q14677 625 aa15.49■□□□□ 0.07
VPS53-210ENST00000571456 GTSCR1Q86UQ5 136 aa15.49■□□□□ 0.07
VPS53-210ENST00000571456 ST8SIA2Q92186 375 aa15.49■□□□□ 0.07
VPS53-210ENST00000571456 TNFSF18Q9UNG2 199 aa15.49■□□□□ 0.07
VPS53-210ENST00000571456 ELOA3CA0A087WX78 387 aaPredicted RBP15.48■□□□□ 0.07
VPS53-210ENST00000571456 FXYD6-FXYD2A0A087WZ82 144 aa15.48■□□□□ 0.07
VPS53-210ENST00000571456 C17orf112F2Z3M2 114 aa15.48■□□□□ 0.07
VPS53-210ENST00000571456 HYPMO75409 117 aa15.48■□□□□ 0.07
VPS53-210ENST00000571456 EDN2P20800 178 aa15.48■□□□□ 0.07
VPS53-210ENST00000571456 CMC4P56277 68 aaPredicted RBP15.48■□□□□ 0.07
VPS53-210ENST00000571456 OPCMLQ14982 345 aa15.48■□□□□ 0.07
VPS53-210ENST00000571456 CASC10Q5T4H9 136 aa15.48■□□□□ 0.07
VPS53-210ENST00000571456 ZNF709Q8N972 641 aa15.48■□□□□ 0.07
VPS53-210ENST00000571456 GPR82Q96P67 336 aa15.48■□□□□ 0.07
VPS53-210ENST00000571456 PFDN5Q99471 154 aa15.48■□□□□ 0.07
VPS53-210ENST00000571456 RNF2Q99496 336 aa15.48■□□□□ 0.07
VPS53-210ENST00000571456 NEURL2Q9BR09 285 aa15.48■□□□□ 0.07
VPS53-210ENST00000571456 GGTLC1Q9BX51 225 aa15.48■□□□□ 0.07
VPS53-210ENST00000571456 WDR61Q9GZS3 305 aaKnown RBP15.48■□□□□ 0.07
VPS53-210ENST00000571456 OR4C46A6NHA9 309 aa15.47■□□□□ 0.07
VPS53-210ENST00000571456 PRR20EP86478 221 aa15.47■□□□□ 0.07
VPS53-210ENST00000571456 PRR20CP86479 221 aa15.47■□□□□ 0.07
VPS53-210ENST00000571456 PRR20DP86480 221 aa15.47■□□□□ 0.07
VPS53-210ENST00000571456 PRR20BP86481 221 aa15.47■□□□□ 0.07
VPS53-210ENST00000571456 PRR20AP86496 221 aa15.47■□□□□ 0.07
VPS53-210ENST00000571456 Q5BKY6 102 aa15.47■□□□□ 0.07
VPS53-210ENST00000571456 FAM90A2PQ658T7 463 aa15.47■□□□□ 0.07
VPS53-210ENST00000571456 C16orf54Q6UWD8 224 aa15.47■□□□□ 0.07
VPS53-210ENST00000571456 TCF24Q7RTU0 167 aa15.47■□□□□ 0.07
VPS53-210ENST00000571456 OR1L4Q8NGR5 311 aa15.47■□□□□ 0.07
VPS53-210ENST00000571456 SCGB1C1Q8TD33 95 aa15.47■□□□□ 0.07
VPS53-210ENST00000571456 PPP1R14BQ96C90 147 aa15.47■□□□□ 0.07
VPS53-210ENST00000571456 NPCDR1Q9BY65 106 aa15.47■□□□□ 0.07
VPS53-210ENST00000571456 HIGD1AQ9Y241 93 aa15.47■□□□□ 0.07
VPS53-210ENST00000571456 ZNF785A8K8V0 405 aa15.46■□□□□ 0.07
VPS53-210ENST00000571456 HMSDA8MTL9 139 aa15.46■□□□□ 0.07
VPS53-210ENST00000571456 ORM2P19652 201 aa15.46■□□□□ 0.07
VPS53-210ENST00000571456 GUCA2BQ16661 112 aa15.46■□□□□ 0.07
VPS53-210ENST00000571456 OR1B1Q8NGR6 318 aa15.46■□□□□ 0.07
VPS53-210ENST00000571456 FAM110AQ9BQ89 295 aa15.46■□□□□ 0.07
VPS53-210ENST00000571456 LCE6AA0A183 80 aa15.45■□□□□ 0.06
VPS53-210ENST00000571456 G3V3Q6 166 aa15.45■□□□□ 0.06
VPS53-210ENST00000571456 TAAR5O14804 337 aa15.45■□□□□ 0.06
VPS53-210ENST00000571456 APOHP02749 345 aaPredicted RBP15.45■□□□□ 0.06
VPS53-210ENST00000571456 GATA2P23769 480 aaPredicted RBP15.45■□□□□ 0.06
VPS53-210ENST00000571456 ZNF345Q14585 488 aa15.45■□□□□ 0.06
VPS53-210ENST00000571456 SAMD13Q5VXD3 122 aa15.45■□□□□ 0.06
VPS53-210ENST00000571456 TMEM182Q6ZP80 229 aaPredicted RBP15.45■□□□□ 0.06
VPS53-210ENST00000571456 TCTE3Q8IZS6 198 aa15.45■□□□□ 0.06
VPS53-210ENST00000571456 STPG3Q8N7X2 389 aa15.45■□□□□ 0.06
VPS53-210ENST00000571456 GLMPQ8WWB7 406 aa15.45■□□□□ 0.06
VPS53-210ENST00000571456 ARL6Q9H0F7 186 aa15.45■□□□□ 0.06
VPS53-210ENST00000571456 IGHV3OR16-13A0A075B7E8 117 aa15.44■□□□□ 0.06
VPS53-210ENST00000571456 IGHV3-49A0A0A0MS15 119 aa15.44■□□□□ 0.06
VPS53-210ENST00000571456 IGHV3-74A0A0B4J1X5 117 aa15.44■□□□□ 0.06
VPS53-210ENST00000571456 IZUMO1RA6ND01 250 aa15.44■□□□□ 0.06
VPS53-210ENST00000571456 B2MP61769 119 aa15.44■□□□□ 0.06
VPS53-210ENST00000571456 SLC39A9Q9NUM3 307 aa15.44■□□□□ 0.06
VPS53-210ENST00000571456 RNF222A6NCQ9 220 aa15.43■□□□□ 0.06
VPS53-210ENST00000571456 COX7A2P2O60397 106 aa15.43■□□□□ 0.06
VPS53-210ENST00000571456 OR5G3P0C626 314 aa15.43■□□□□ 0.06
VPS53-210ENST00000571456 SIGLEC15Q6ZMC9 328 aa15.43■□□□□ 0.06
VPS53-210ENST00000571456 OR8I2Q8N0Y5 310 aa15.43■□□□□ 0.06
VPS53-210ENST00000571456 MUC7Q8TAX7 377 aa15.43■□□□□ 0.06
VPS53-210ENST00000571456 GATAD1Q8WUU5 269 aa15.43■□□□□ 0.06
VPS53-210ENST00000571456 PRR25Q96S07 402 aa15.43■□□□□ 0.06
VPS53-210ENST00000571456 SHANK2-AS3Q9BTD1 123 aa15.43■□□□□ 0.06
VPS53-210ENST00000571456 SLC25A39Q9BZJ4 359 aaPredicted RBP15.43■□□□□ 0.06
VPS53-210ENST00000571456 SMIM3Q9BZL3 60 aa15.43■□□□□ 0.06
VPS53-210ENST00000571456 ARV1Q9H2C2 271 aa15.43■□□□□ 0.06
VPS53-210ENST00000571456 SEPSECSQ9HD40 501 aaKnown RBP15.43■□□□□ 0.06
VPS53-210ENST00000571456 DNAJC4Q9NNZ3 241 aa15.43■□□□□ 0.06
VPS53-210ENST00000571456 PXMP4Q9Y6I8 212 aa15.43■□□□□ 0.06
VPS53-210ENST00000571456 ZNF98A6NK75 572 aa15.42■□□□□ 0.06
VPS53-210ENST00000571456 H3BRN7 92 aa15.42■□□□□ 0.06
VPS53-210ENST00000571456 ARPC5O15511 151 aa15.42■□□□□ 0.06
VPS53-210ENST00000571456 RPL11P62913 178 aaKnown RBP15.42■□□□□ 0.06
VPS53-210ENST00000571456 MIC13Q5XKP0 118 aa15.42■□□□□ 0.06
VPS53-210ENST00000571456 AKAP14Q86UN6 197 aa15.42■□□□□ 0.06
VPS53-210ENST00000571456 ST6GAL2Q96JF0 529 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms