RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 CORO2AQ92828 525 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 EAF1Q96JC9 268 aaPredicted RBP6.89□□□□□ -1.31
VPS4B-201ENST00000238497 P2RX4Q99571 388 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 IGHV1-3A0A0C4DH29 117 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 HOXA3O43365 443 aaPredicted RBP6.89□□□□□ -1.31
VPS4B-201ENST00000238497 HTR1DP28221 377 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 C1QL4Q86Z23 238 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 LINC00518Q8N0U6 118 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 OR52E5Q8NH55 327 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 OCC1Q8TAD7 63 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 MALSU1Q96EH3 234 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 PPP1R2P9O14990 202 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 MPDU1O75352 247 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 PRSS8Q16651 343 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 HLA-DRB5Q30154 266 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 ZNF833PQ6ZTB9 187 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 TMEM144Q7Z5S9 345 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 OR5AN1Q8NGI8 311 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 ZNF48Q96MX3 618 aaPredicted RBP6.88□□□□□ -1.31
VPS4B-201ENST00000238497 FBN3Q75N90 2809 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 BUB1B-PAK6H3BSN5 160 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 CA1P00915 261 aaPredicted RBP6.88□□□□□ -1.31
VPS4B-201ENST00000238497 MC5RP33032 325 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 CD69Q07108 199 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 PNRC1Q12796 327 aaPredicted RBP6.88□□□□□ -1.31
VPS4B-201ENST00000238497 C10orf113Q5VZT2 155 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 VMO1Q7Z5L0 202 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 PPP1R27Q86WC6 154 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 BET1LQ9NYM9 111 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 LINC00527Q9UJ94 153 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 IGHV3OR16-13A0A075B7E8 117 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 IGHV3-74A0A0B4J1X5 117 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 HELTA6NFD8 242 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 STAG3L2P0CL84 134 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 STAG3L3P0CL85 134 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 GNG5P63218 68 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 CYP2G1PQ6ZSU1 146 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 PDPNQ86YL7 162 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 OR2T10Q8NGZ9 312 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 TBX15Q96SF7 602 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 IMMP2LQ96T52 175 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 RNASE7Q9H1E1 156 aaKnown RBP6.88□□□□□ -1.31
VPS4B-201ENST00000238497 DNAJC4Q9NNZ3 241 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 TECRQ9NZ01 308 aaKnown RBP6.88□□□□□ -1.31
VPS4B-201ENST00000238497 TIMM8BQ9Y5J9 83 aaPredicted RBP6.88□□□□□ -1.31
VPS4B-201ENST00000238497 SELENOKQ9Y6D0 94 aa6.88□□□□□ -1.31
VPS4B-201ENST00000238497 A0A1B0GW64 132 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 A0A1W2PN81 502 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 HIST1H2BKO60814 126 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 HIST1H2BJP06899 126 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 HIST1H2BOP23527 126 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 HIST1H2BBP33778 126 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 MEOX2P50222 304 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 HIST1H2BDP58876 126 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 HIST1H2BCP62807 126 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 PAX2Q02962 417 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 HIST2H2BEQ16778 126 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.87□□□□□ -1.31
VPS4B-201ENST00000238497 LINC00305Q7Z4B0 112 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 HIST1H2BHQ93079 126 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 HIST1H2BNQ99877 126 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 HIST1H2BMQ99879 126 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 NDUFA4L2Q9NRX3 87 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 KCNIP2Q9NS61 270 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 SLC45A2Q9UMX9 530 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 POLR3KQ9Y2Y1 108 aaPredicted RBP6.87□□□□□ -1.31
VPS4B-201ENST00000238497 CENPVL3A0A0U1RRI6 287 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 FAM181BA6NEQ2 426 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 ZNF705GA8MUZ8 300 aaPredicted RBP6.87□□□□□ -1.31
VPS4B-201ENST00000238497 GNG4P50150 75 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 TAS2R45P59539 299 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 KIAA1644Q3SXP7 199 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 ZNF596Q8TC21 504 aa6.87□□□□□ -1.31
VPS4B-201ENST00000238497 SRSF12Q8WXF0 261 aaKnown RBP6.87□□□□□ -1.31
VPS4B-201ENST00000238497 A0A1B0GUS0 222 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 TMEM250H0YL14 139 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 MRPL54Q6P161 138 aaKnown RBP6.86□□□□□ -1.31
VPS4B-201ENST00000238497 MMD2Q8IY49 270 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 Q8N7P7 452 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 KAAG1Q9UBP8 84 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 TRBV20OR9-2A0A075B6H5 130 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 IGHV1-69DA0A0B4J2H0 117 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 GRIFINA4D1Z8 144 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 PDE6DO43924 150 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 IGHV1-69P01742 117 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 SLC25A5P05141 298 aaKnown RBP6.86□□□□□ -1.31
VPS4B-201ENST00000238497 PAX5Q02548 391 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 ECSCRQ19T08 205 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 TIGITQ495A1 244 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 KCNIP4Q6PIL6 250 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 C11orf42Q8N5U0 333 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 OR10G8Q8NGN5 311 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 PAXXQ9BUH6 204 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 WNT10AQ9GZT5 417 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 DPM3Q9P2X0 92 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 SIGLEC9Q9Y336 463 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 XKRY2A2RUG3 117 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 B4DEV8 164 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 CLN5O75503 358 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 C8orf88P0DMB2 117 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms