RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 Q6ZN92 141 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 MIR17HGQ75NE6 70 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 TCF23Q7RTU1 214 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 ATP5L2Q7Z4Y8 100 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 ITLN1Q8WWA0 313 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 ITLN2Q8WWU7 325 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-214ENST00000637038 FLYWCH2Q96CP2 140 aaKnown RBP3.26□□□□□ -1.89
SCN1A-214ENST00000637038 SMIM12Q96EX1 92 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 PLPPR2Q96GM1 343 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 C5orf30Q96GV9 206 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 HARBI1Q96MB7 349 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 IGHV3OR15-7A0A075B7D8 119 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 CORTO00230 105 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 EREGO14944 169 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 CD5LO43866 347 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 ZNF324O75467 553 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-214ENST00000637038 NBEAP1P0C6P0 100 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 CEACAM8P31997 349 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-214ENST00000637038 MC5RP33032 325 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 KIR2DL2P43627 348 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-214ENST00000637038 GATA4P43694 442 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 COMPP49747 757 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-214ENST00000637038 PPOXP50336 477 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 PRR20EP86478 221 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 PRR20CP86479 221 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 PRR20DP86480 221 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 PRR20BP86481 221 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 PRR20AP86496 221 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 CD69Q07108 199 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 LRRC10Q5BKY1 277 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 FAM71F2Q6NXP2 309 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 MRPL54Q6P161 138 aaKnown RBP3.26□□□□□ -1.89
SCN1A-214ENST00000637038 VKORC1L1Q8N0U8 176 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 ZNF48Q96MX3 618 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-214ENST00000637038 ATG101Q9BSB4 218 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 DCTN5Q9BTE1 182 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 SNHG12Q9BXW3 62 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 HIF1ANQ9NWT6 349 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 TBL2Q9Y4P3 447 aaKnown RBP3.26□□□□□ -1.89
SCN1A-214ENST00000637038 AMMECR1Q9Y4X0 333 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-214ENST00000637038 LINC00312Q9Y6C7 94 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 CNTRLQ7Z7A1 2325 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 RAI1Q7Z5J4 1906 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-214ENST00000637038 FREM1Q5H8C1 2179 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 SPTBN2O15020 2390 aa3.26□□□□□ -1.89
SCN1A-214ENST00000637038 IGKV1D-17A0A075B6S4 117 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 A8MWL6 223 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 M0R2Z0 102 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 LINC00869P0C866 280 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 SRIP30626 198 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 PTTG1IPP53801 180 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 TCL1AP56279 114 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 C9orf106Q8NAJ2 232 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 SNRNP40Q96DI7 357 aaKnown RBP3.25□□□□□ -1.89
SCN1A-214ENST00000637038 WFIKKN1Q96NZ8 548 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 ZFAND3Q9H8U3 227 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 NRN1Q9NPD7 142 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 YAE1D1Q9NRH1 226 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 DOPEY2Q9Y3R5 2298 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 MED12LQ86YW9 2145 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 PEX7O00628 323 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 CHEK1O14757 476 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 NDUFB3O43676 98 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 SLC25A5P05141 298 aaKnown RBP3.25□□□□□ -1.89
SCN1A-214ENST00000637038 GPX1P07203 203 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 MFAP2P55001 183 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 VWA1Q6PCB0 445 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 PET117Q6UWS5 81 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 Q6ZR03 302 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 FAM231DQ6ZW35 169 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 DEFB108BQ8NET1 73 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 TMEM186Q96B77 213 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 NUDT11Q96G61 164 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 GNB4Q9HAV0 340 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 RPUSD1Q9UJJ7 312 aaKnown RBP3.25□□□□□ -1.89
SCN1A-214ENST00000637038 WASHC3Q9Y3C0 194 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 SLC25A15Q9Y619 301 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 V9GYV3 84 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 DPRXA6NFQ7 191 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 NKX2-8O15522 239 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 SPATA31B1PQ5VZV4 182 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 RNASEKQ6P5S7 137 aaKnown RBP3.25□□□□□ -1.89
SCN1A-214ENST00000637038 DOLPP1Q86YN1 238 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 Q8N7P7 452 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 ZNF114Q8NC26 417 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 ZNRF1Q8ND25 227 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 OR2D3Q8NGH3 330 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 OR4C13Q8NGP0 309 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 WIPF2Q8TF74 440 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-214ENST00000637038 DDB2Q92466 427 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 RNASE6Q93091 150 aaKnown RBP3.25□□□□□ -1.89
SCN1A-214ENST00000637038 TMEM191AQ9H0A3 160 aa3.25□□□□□ -1.89
SCN1A-214ENST00000637038 SMIM27A0A1W2PRY6 76 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 PRSS46E5RG02 174 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 P01737 135 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 DEFA4P12838 97 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 SRD5A1P18405 259 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 LGALS7P47929 136 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 LOXL3P58215 753 aa3.24□□□□□ -1.89
SCN1A-214ENST00000637038 BRWD1-AS2P59051 145 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms