RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 CKLFQ9UBR5 152 aa2.18□□□□□ -2.06
UPF3B-203ENST00000478840 KIF24Q5T7B8 1368 aa2.18□□□□□ -2.06
UPF3B-203ENST00000478840 STRCQ7RTU9 1775 aa2.18□□□□□ -2.06
UPF3B-203ENST00000478840 HEATR5AQ86XA9 2040 aa2.17□□□□□ -2.06
UPF3B-203ENST00000478840 ATG12O94817 140 aa2.17□□□□□ -2.06
UPF3B-203ENST00000478840 IFNA1P01562 189 aa2.17□□□□□ -2.06
UPF3B-203ENST00000478840 HTR1AP08908 422 aa2.17□□□□□ -2.06
UPF3B-203ENST00000478840 COX6A1P12074 109 aa2.17□□□□□ -2.06
UPF3B-203ENST00000478840 VBP1P61758 197 aa2.17□□□□□ -2.06
UPF3B-203ENST00000478840 TRAPPC6BQ86SZ2 158 aa2.17□□□□□ -2.06
UPF3B-203ENST00000478840 SIGLECL1Q8N7X8 197 aa2.17□□□□□ -2.06
UPF3B-203ENST00000478840 OR8B3Q8NGG8 313 aa2.17□□□□□ -2.06
UPF3B-203ENST00000478840 ZFHX2Q9C0A1 2572 aaPredicted RBP2.17□□□□□ -2.06
UPF3B-203ENST00000478840 RIC1Q4ADV7 1423 aa2.17□□□□□ -2.06
UPF3B-203ENST00000478840 SCN10AQ9Y5Y9 1956 aa2.16□□□□□ -2.06
UPF3B-203ENST00000478840 CUL9Q8IWT3 2517 aa2.16□□□□□ -2.06
UPF3B-203ENST00000478840 A0A0D9SG52 128 aa2.16□□□□□ -2.06
UPF3B-203ENST00000478840 IBA57-AS1B1ANH7 110 aa2.16□□□□□ -2.06
UPF3B-203ENST00000478840 HMGB3O15347 200 aaKnown RBP2.16□□□□□ -2.06
UPF3B-203ENST00000478840 TCL1BO95988 128 aa2.16□□□□□ -2.06
UPF3B-203ENST00000478840 ATP5G3P48201 142 aa2.16□□□□□ -2.06
UPF3B-203ENST00000478840 PIGPP57054 158 aa2.16□□□□□ -2.06
UPF3B-203ENST00000478840 KRTAP13-4Q3LI77 160 aa2.16□□□□□ -2.06
UPF3B-203ENST00000478840 PCOTHQ58A44 107 aa2.16□□□□□ -2.06
UPF3B-203ENST00000478840 LCN15Q6UWW0 184 aa2.16□□□□□ -2.06
UPF3B-203ENST00000478840 DNAJC9Q8WXX5 260 aa2.16□□□□□ -2.06
UPF3B-203ENST00000478840 PRNDQ9UKY0 176 aa2.16□□□□□ -2.06
UPF3B-203ENST00000478840 LHFPL6Q9Y693 200 aa2.16□□□□□ -2.06
UPF3B-203ENST00000478840 PLXND1Q9Y4D7 1925 aa2.16□□□□□ -2.06
UPF3B-203ENST00000478840 MDC1Q14676 2089 aaKnown RBP2.16□□□□□ -2.06
UPF3B-203ENST00000478840 MIA2Q96PC5 1412 aa2.16□□□□□ -2.06
UPF3B-203ENST00000478840 MYH11P35749 1972 aa2.16□□□□□ -2.06
UPF3B-203ENST00000478840 ECM29Q5VYK3 1845 aa2.15□□□□□ -2.06
UPF3B-203ENST00000478840 ROCK1Q13464 1354 aa2.15□□□□□ -2.07
UPF3B-203ENST00000478840 ZNF737O75373 536 aa2.15□□□□□ -2.07
UPF3B-203ENST00000478840 RPSAP08865 295 aaKnown RBP2.15□□□□□ -2.07
UPF3B-203ENST00000478840 SPI1P17947 270 aa2.15□□□□□ -2.07
UPF3B-203ENST00000478840 G0S2P27469 103 aa2.15□□□□□ -2.07
UPF3B-203ENST00000478840 SRIP30626 198 aa2.15□□□□□ -2.07
UPF3B-203ENST00000478840 DEFA3P59666 94 aa2.15□□□□□ -2.07
UPF3B-203ENST00000478840 TMEM155Q4W5P6 130 aa2.15□□□□□ -2.07
UPF3B-203ENST00000478840 LYRM7Q5U5X0 104 aa2.15□□□□□ -2.07
UPF3B-203ENST00000478840 ADAT3Q96EY9 351 aaPredicted RBP2.15□□□□□ -2.07
UPF3B-203ENST00000478840 IMUPQ9GZP8 106 aa2.15□□□□□ -2.07
UPF3B-203ENST00000478840 MIXL1Q9H2W2 232 aa2.15□□□□□ -2.07
UPF3B-203ENST00000478840 BOLA2Q9H3K6 86 aa2.15□□□□□ -2.07
UPF3B-203ENST00000478840 OSTCQ9NRP0 149 aa2.15□□□□□ -2.07
UPF3B-203ENST00000478840 NUMA1Q14980 2115 aa2.14□□□□□ -2.07
UPF3B-203ENST00000478840 MEIKINA0A087WXM9 373 aa2.14□□□□□ -2.07
UPF3B-203ENST00000478840 A0A087X0T9 212 aa2.14□□□□□ -2.07
UPF3B-203ENST00000478840 IGKV1-9A0A0C4DH69 117 aa2.14□□□□□ -2.07
UPF3B-203ENST00000478840 CLDN25C9JDP6 229 aa2.14□□□□□ -2.07
UPF3B-203ENST00000478840 SDCBPO00560 298 aaPredicted RBP2.14□□□□□ -2.07
UPF3B-203ENST00000478840 IFNA7P01567 189 aa2.14□□□□□ -2.07
UPF3B-203ENST00000478840 ZNF345Q14585 488 aa2.14□□□□□ -2.07
UPF3B-203ENST00000478840 NNATQ16517 81 aa2.14□□□□□ -2.07
UPF3B-203ENST00000478840 ARHGAP11BQ3KRB8 267 aa2.14□□□□□ -2.07
UPF3B-203ENST00000478840 Q6ZRN7 208 aaPredicted RBP2.14□□□□□ -2.07
UPF3B-203ENST00000478840 STX12Q86Y82 276 aa2.14□□□□□ -2.07
UPF3B-203ENST00000478840 C10orf126Q8N4M7 172 aa2.14□□□□□ -2.07
UPF3B-203ENST00000478840 ZNF439Q8NDP4 499 aa2.14□□□□□ -2.07
UPF3B-203ENST00000478840 HOPXQ9BPY8 73 aaPredicted RBP2.14□□□□□ -2.07
UPF3B-203ENST00000478840 GINS4Q9BRT9 223 aa2.14□□□□□ -2.07
UPF3B-203ENST00000478840 GINS3Q9BRX5 216 aa2.14□□□□□ -2.07
UPF3B-203ENST00000478840 SH3BGRL3Q9H299 93 aa2.14□□□□□ -2.07
UPF3B-203ENST00000478840 GID8Q9NWU2 228 aa2.14□□□□□ -2.07
UPF3B-203ENST00000478840 AMMECR1Q9Y4X0 333 aaPredicted RBP2.14□□□□□ -2.07
UPF3B-203ENST00000478840 MED1Q15648 1581 aaPredicted RBP2.14□□□□□ -2.07
UPF3B-203ENST00000478840 CCDC88AQ3V6T2 1871 aa2.14□□□□□ -2.07
UPF3B-203ENST00000478840 ORC5O43913 435 aa2.13□□□□□ -2.07
UPF3B-203ENST00000478840 PMP2P02689 132 aa2.13□□□□□ -2.07
UPF3B-203ENST00000478840 SHBGP04278 402 aa2.13□□□□□ -2.07
UPF3B-203ENST00000478840 NCALDP61601 193 aa2.13□□□□□ -2.07
UPF3B-203ENST00000478840 GNG3P63215 75 aa2.13□□□□□ -2.07
UPF3B-203ENST00000478840 Q6ZQT0 140 aa2.13□□□□□ -2.07
UPF3B-203ENST00000478840 ZNF826PQ6ZT77 177 aa2.13□□□□□ -2.07
UPF3B-203ENST00000478840 C7orf65Q6ZTY9 151 aa2.13□□□□□ -2.07
UPF3B-203ENST00000478840 OR5A1Q8NGJ0 315 aa2.13□□□□□ -2.07
UPF3B-203ENST00000478840 WFDC5Q8TCV5 224 aa2.13□□□□□ -2.07
UPF3B-203ENST00000478840 NEK7Q8TDX7 302 aa2.13□□□□□ -2.07
UPF3B-203ENST00000478840 EPDR1Q9UM22 224 aa2.13□□□□□ -2.07
UPF3B-203ENST00000478840 UTP11Q9Y3A2 253 aaKnown RBP2.13□□□□□ -2.07
UPF3B-203ENST00000478840 CCDC88CQ9P219 2028 aa2.13□□□□□ -2.07
UPF3B-203ENST00000478840 TONSLQ96HA7 1378 aa2.12□□□□□ -2.07
UPF3B-203ENST00000478840 GLI3P10071 1580 aa2.12□□□□□ -2.07
UPF3B-203ENST00000478840 TMEM212A6NML5 194 aa2.12□□□□□ -2.07
UPF3B-203ENST00000478840 CYB5BO43169 146 aa2.12□□□□□ -2.07
UPF3B-203ENST00000478840 CTSDP07339 412 aaPredicted RBP2.12□□□□□ -2.07
UPF3B-203ENST00000478840 OR4E1P0C645 316 aa2.12□□□□□ -2.07
UPF3B-203ENST00000478840 RRN3P1Q2M238 152 aa2.12□□□□□ -2.07
UPF3B-203ENST00000478840 KHDC3LQ587J8 217 aa2.12□□□□□ -2.07
UPF3B-203ENST00000478840 AKR1C8PQ5T2L2 129 aa2.12□□□□□ -2.07
UPF3B-203ENST00000478840 DPPA3Q6W0C5 159 aa2.12□□□□□ -2.07
UPF3B-203ENST00000478840 AAED1Q7RTV5 226 aa2.12□□□□□ -2.07
UPF3B-203ENST00000478840 OR4D11Q8NGI4 311 aa2.12□□□□□ -2.07
UPF3B-203ENST00000478840 OR8D4Q8NGM9 314 aa2.12□□□□□ -2.07
UPF3B-203ENST00000478840 OR13C6PQ8NH95 151 aa2.12□□□□□ -2.07
UPF3B-203ENST00000478840 FAM172AQ8WUF8 416 aa2.12□□□□□ -2.07
UPF3B-203ENST00000478840 SLAMF6Q96DU3 332 aa2.12□□□□□ -2.07
UPF3B-203ENST00000478840 YIPF3Q9GZM5 350 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms