RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 IGHV1-45A0A0A0MS14 117 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 IGHV3-66A0A0C4DH42 116 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 LOC100130705A0A1B0GUX0 176 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 SOCS1O15524 211 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 DEDDO75618 318 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 LTAP01374 205 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 GPX1P07203 203 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 SEC11BP0C7V7 166 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 CSRP1P21291 193 aaKnown RBP2.88□□□□□ -1.95
HMGB1-204ENST00000399489 RBMXP38159 391 aaKnown RBP2.88□□□□□ -1.95
HMGB1-204ENST00000399489 NMUP48645 174 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 ZNF136P52737 540 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 CRISP3P54108 245 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 RHOGP84095 191 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 CAV1Q03135 178 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 Q1RN00 199 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 C6orf52Q5T4I8 152 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 LAIR2Q6ISS4 152 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 SMIM5Q71RC9 77 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 LRP11Q86VZ4 500 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 ZNF436-AS1Q8NC38 126 aaPredicted RBP2.88□□□□□ -1.95
HMGB1-204ENST00000399489 PPTC7Q8NI37 304 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 FNDC9Q8TBE3 224 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 SLC25A40Q8TBP6 338 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 PP6455Q8WZ26 134 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 FRZBQ92765 325 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 ZNF414Q96IQ9 312 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 DEFB126Q9BYW3 111 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 TAC3Q9UHF0 121 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 RPUSD1Q9UJJ7 312 aaKnown RBP2.88□□□□□ -1.95
HMGB1-204ENST00000399489 TNRC18O15417 2968 aaPredicted RBP2.87□□□□□ -1.95
HMGB1-204ENST00000399489 A0A0C4DFX4 3053 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 PCM1Q15154 2024 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 NSD3Q9BZ95 1437 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 ITSN1Q15811 1721 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 TRBV19A0A075B6N1 114 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 TRAV4A0A0B4J268 109 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 IGHV1-69-2A0A0G2JMI3 117 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 A0A1B0GVY2 172 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 LY6G6DO95868 133 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 IGLV3-27P01718 113 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 IGHV3-13P01766 116 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 MAS1P04201 325 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 P0C879 139 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 CRHBPP24387 322 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 OR10J1P30954 320 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 NOVP48745 357 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 DAPP51397 102 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 ZNF83P51522 516 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 S100A10P60903 97 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 TIMM10P62072 90 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 MEF2BQ02080 365 aaPredicted RBP2.87□□□□□ -1.95
HMGB1-204ENST00000399489 DHRS2Q13268 280 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 ENDOGQ14249 297 aaKnown RBP2.87□□□□□ -1.95
HMGB1-204ENST00000399489 FKBP1CQ5VVH2 108 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 MKXQ8IYA7 352 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 C1orf174Q8IYL3 243 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 OR4K5Q8NGD3 323 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 RBPMSQ93062 196 aaKnown RBP2.87□□□□□ -1.95
HMGB1-204ENST00000399489 MS4A6EQ96DS6 147 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 IGF2BP2-AS1Q96M15 143 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 C8orf17Q9NRJ1 99 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 ZNF492Q9P255 531 aa2.87□□□□□ -1.95
HMGB1-204ENST00000399489 PIK3C2AO00443 1686 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 KDM6AO15550 1401 aaPredicted RBP2.86□□□□□ -1.95
HMGB1-204ENST00000399489 LY75O60449 1722 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 KIAA1551Q9HCM1 1747 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 PDE4DIPQ5VU43 2346 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 TMEM269A0A1B0GVZ9 245 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 TRDV1A0A1B0GX56 115 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 TMEM212A6NML5 194 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 J3QRK9 145 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 PHOX2AO14813 284 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 NPFFO15130 113 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 GSTZ1O43708 216 aaPredicted RBP2.86□□□□□ -1.95
HMGB1-204ENST00000399489 IGKV1-39P01597 117 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 IGKV1D-39P04432 117 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 GIG44P09565 113 aaPredicted RBP2.86□□□□□ -1.95
HMGB1-204ENST00000399489 LINC00694P0DN24 101 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 CASP1P29466 404 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 RBM11P57052 281 aaKnown RBP2.86□□□□□ -1.95
HMGB1-204ENST00000399489 HSD52Q0P140 79 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 RPL22L1Q6P5R6 122 aaKnown RBP2.86□□□□□ -1.95
HMGB1-204ENST00000399489 ZDHHC22Q8N966 263 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 GNPNAT1Q96EK6 184 aaPredicted RBP2.86□□□□□ -1.95
HMGB1-204ENST00000399489 CCL13Q99616 98 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 TVP23BQ9NYZ1 205 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 NUFIP1Q9UHK0 495 aaKnown RBP2.86□□□□□ -1.95
HMGB1-204ENST00000399489 CYSLTR1Q9Y271 337 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 VCANP13611 3396 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 TOGARAM1Q9Y4F4 1720 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 LAMA3Q16787 3333 aa2.86□□□□□ -1.95
HMGB1-204ENST00000399489 MYH2Q9UKX2 1941 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 IGLV1-50A0A075B6I6 118 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 IGKV1-6A0A0C4DH72 117 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 SPAARA0A1B0GVQ0 90 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 BBIP1A8MTZ0 92 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 H7BYZ3 331 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 SLC25A14O95258 325 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-204ENST00000399489 INSP01308 110 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms