RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 CDK10Q15131 360 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 SSX1Q16384 188 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 HIST3H3Q16695 136 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 C4orf26Q17RF5 130 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 CLEC12BQ2HXU8 276 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 TMEM97Q5BJF2 176 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 TMEM42Q69YG0 159 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 XKRXQ6PP77 449 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 TMPPEQ6ZT21 453 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 LINC00596Q86U02 117 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 MUC15Q8N387 334 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 FAM24BQ8N5W8 94 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 ZNF433Q8N7K0 673 aaPredicted RBP1.91□□□□□ -2.1
VPS4B-203ENST00000588323 SLC25A29Q8N8R3 303 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 GATD1Q8NB37 220 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 ST6GALNAC3Q8NDV1 305 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 OR2Z1Q8NG97 314 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 OR1M1Q8NGA1 313 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 OR52E4Q8NGH9 312 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 OR5J2Q8NH18 312 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 OR4K15Q8NH41 348 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 STARD4Q96DR4 205 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 YPEL4Q96NS1 127 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 LINC01587Q99440 93 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 TBL1YQ9BQ87 522 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 ANAPC13Q9BS18 74 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 NDFIP1Q9BT67 221 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 MAP1LC3BQ9GZQ8 125 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 CHST5Q9GZS9 411 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 CA10Q9NS85 328 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 ZNF355PQ9NSJ1 428 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 DMAC2Q9NW81 257 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 RASL12Q9NYN1 266 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 VPREB3Q9UKI3 123 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 TP53TG1Q9Y2A0 90 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 SLC35A3Q9Y2D2 325 aa1.91□□□□□ -2.1
VPS4B-203ENST00000588323 HELZP42694 1942 aaKnown RBP1.91□□□□□ -2.1
VPS4B-203ENST00000588323 FBN1P35555 2871 aaKnown RBP1.91□□□□□ -2.1
VPS4B-203ENST00000588323 PTPRDP23468 1912 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 CSMD2Q7Z408 3487 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 CENPVL3A0A0U1RRI6 287 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 SMIM31A0A1B0GVY4 71 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 IGSF23A1L1A6 192 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 CD300LBA8K4G0 201 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 C8orf87E5RJ46 101 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 E7EQ34 232 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 F6UZH7 168 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 M0R143 59 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 M0R2Z0 102 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 FAAHO00519 579 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 MFNGO00587 321 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 COPEO14579 308 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 ZNF207O43670 478 aaKnown RBP1.9□□□□□ -2.11
VPS4B-203ENST00000588323 ORC5O43913 435 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 OR7C1O76099 320 aaPredicted RBP1.9□□□□□ -2.11
VPS4B-203ENST00000588323 CA2P00918 260 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 HLA-DQB1P01920 261 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 MAS1P04201 325 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 SULT1A3P0DMM9 295 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 SULT1A4P0DMN0 295 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 SCGB1C2P0DMR2 95 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 HMGA1P17096 107 aaKnown RBP1.9□□□□□ -2.11
VPS4B-203ENST00000588323 SPI1P17947 270 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 MYL12AP19105 171 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 IMPA1P29218 277 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 OPRK1P41145 380 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 EMP1P54849 157 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 LINC00315P59091 139 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 TAS2R43P59537 309 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 DNAJB13P59910 316 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 PKIAP61925 76 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 RRAS2P62070 204 aaPredicted RBP1.9□□□□□ -2.11
VPS4B-203ENST00000588323 GTF2BQ00403 316 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 EMX2Q04743 252 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 SMAGPQ0VAQ4 97 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 FAM53BQ14153 422 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 EBI3Q14213 229 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 ELOCQ15369 112 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 TAF9Q16594 264 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 LRRC75BQ2VPJ9 315 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 HSD17B12Q53GQ0 312 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 AKR1C8PQ5T2L2 129 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 HENMT1Q5T8I9 393 aaKnown RBP1.9□□□□□ -2.11
VPS4B-203ENST00000588323 C1orf195Q5TG92 126 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 TNFAIP8L2Q6P589 184 aaPredicted RBP1.9□□□□□ -2.11
VPS4B-203ENST00000588323 ALKAL1Q6UXT8 129 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 FA2HQ7L5A8 372 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 FAM19A5Q7Z5A7 132 aaPredicted RBP1.9□□□□□ -2.11
VPS4B-203ENST00000588323 WDR86Q86TI4 376 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 LINC01551Q86U37 167 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 PDPNQ86YL7 162 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 DOLPP1Q86YN1 238 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 C8orf59Q8N0T1 100 aaPredicted RBP1.9□□□□□ -2.11
VPS4B-203ENST00000588323 ORMDL3Q8N138 153 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 LRRC25Q8N386 305 aaPredicted RBP1.9□□□□□ -2.11
VPS4B-203ENST00000588323 CYB561D1Q8N8Q1 229 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 OR13C4Q8NGS5 318 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 OR5H6Q8NGV6 325 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 MFSD8Q8NHS3 518 aa1.9□□□□□ -2.11
VPS4B-203ENST00000588323 CIRBP-AS1Q8TBR5 109 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms