RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 LRTM2Q8N967 370 aa13.82□□□□□ -0.2
SH3RF1-201ENST00000284637 FAM131CQ96AQ9 280 aa13.82□□□□□ -0.2
SH3RF1-201ENST00000284637 TEX29Q8N6K0 151 aa13.82□□□□□ -0.2
SH3RF1-201ENST00000284637 GAGE12BA1L429 117 aa13.82□□□□□ -0.2
SH3RF1-201ENST00000284637 NPIPB11E5RHQ5 1161 aa13.82□□□□□ -0.2
SH3RF1-201ENST00000284637 VWCEQ96DN2 955 aa13.82□□□□□ -0.2
SH3RF1-201ENST00000284637 THSD7AQ9UPZ6 1657 aa13.82□□□□□ -0.2
SH3RF1-201ENST00000284637 RGPD3A6NKT7 1758 aaPredicted RBP13.82□□□□□ -0.2
SH3RF1-201ENST00000284637 A0A1B0GUT8 65 aa13.82□□□□□ -0.2
SH3RF1-201ENST00000284637 IGHV3-23P01764 117 aa13.82□□□□□ -0.2
SH3RF1-201ENST00000284637 SUPT4H1P63272 117 aaKnown RBP13.82□□□□□ -0.2
SH3RF1-201ENST00000284637 OCIAD2Q56VL3 154 aa13.81□□□□□ -0.2
SH3RF1-201ENST00000284637 OR52E5Q8NH55 327 aa13.81□□□□□ -0.2
SH3RF1-201ENST00000284637 OSR1Q8TAX0 266 aaPredicted RBP13.81□□□□□ -0.2
SH3RF1-201ENST00000284637 FBXL15Q9H469 300 aa13.81□□□□□ -0.2
SH3RF1-201ENST00000284637 SCN10AQ9Y5Y9 1956 aa13.81□□□□□ -0.2
SH3RF1-201ENST00000284637 SSBP4Q9BWG4 385 aaPredicted RBP13.81□□□□□ -0.2
SH3RF1-201ENST00000284637 SCGB1A1P11684 91 aa13.81□□□□□ -0.2
SH3RF1-201ENST00000284637 FAM89BQ8N5H3 189 aa13.81□□□□□ -0.2
SH3RF1-201ENST00000284637 WBP1Q96G27 269 aa13.81□□□□□ -0.2
SH3RF1-201ENST00000284637 POLR3KQ9Y2Y1 108 aaPredicted RBP13.81□□□□□ -0.2
SH3RF1-201ENST00000284637 HIGD1CA8MV81 97 aa13.81□□□□□ -0.2
SH3RF1-201ENST00000284637 TSPOP30536 169 aa13.81□□□□□ -0.2
SH3RF1-201ENST00000284637 STPG1Q5TH74 334 aa13.81□□□□□ -0.2
SH3RF1-201ENST00000284637 INTS1Q8N201 2190 aaKnown RBP13.81□□□□□ -0.2
SH3RF1-201ENST00000284637 OR10W1Q8NGF6 305 aa13.81□□□□□ -0.2
SH3RF1-201ENST00000284637 ZNF418Q8TF45 676 aaPredicted RBP13.81□□□□□ -0.2
SH3RF1-201ENST00000284637 PSG1P11464 419 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 SELLP14151 372 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 WDR82Q6UXN9 313 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 LHFPL1Q86WI0 220 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 VSIRQ9H7M9 311 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 ARID2Q68CP9 1835 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 ZNF236Q9UL36 1845 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 IGHV3OR16-8A0A075B7F1 116 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 CELA3BP08861 270 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 LYL1P12980 280 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 NPPCP23582 126 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 RALGAPA1Q6GYQ0 2036 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 TP53BP1Q12888 1972 aaPredicted RBP13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 ESDP10768 282 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 TMEM30BQ3MIR4 351 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 MESP1Q9BRJ9 268 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 RPP21Q9H633 154 aaKnown RBP13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 IGHV3-66A0A0C4DH42 116 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 RAMP3O60896 148 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 FADS6Q8N9I5 356 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 FGF11Q92914 225 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 MS4A6AQ9H2W1 248 aa13.8□□□□□ -0.2
SH3RF1-201ENST00000284637 MPDZO75970 2070 aa13.79□□□□□ -0.2
SH3RF1-201ENST00000284637 GLRXP35754 106 aa13.79□□□□□ -0.2
SH3RF1-201ENST00000284637 CST9LQ9H4G1 147 aa13.79□□□□□ -0.2
SH3RF1-201ENST00000284637 OSTCQ9NRP0 149 aa13.79□□□□□ -0.2
SH3RF1-201ENST00000284637 KIR2DL4Q99706 377 aa13.79□□□□□ -0.2
SH3RF1-201ENST00000284637 FOXA2Q9Y261 457 aaPredicted RBP13.79□□□□□ -0.2
SH3RF1-201ENST00000284637 GBF1Q92538 1859 aa13.79□□□□□ -0.2
SH3RF1-201ENST00000284637 TYMSP04818 313 aa13.79□□□□□ -0.2
SH3RF1-201ENST00000284637 LY6EQ16553 131 aa13.79□□□□□ -0.2
SH3RF1-201ENST00000284637 DDB2Q92466 427 aa13.79□□□□□ -0.2
SH3RF1-201ENST00000284637 DEPPQ9NTK1 212 aa13.79□□□□□ -0.2
SH3RF1-201ENST00000284637 M0R381 172 aa13.79□□□□□ -0.2
SH3RF1-201ENST00000284637 IGKV3-20P01619 116 aa13.79□□□□□ -0.2
SH3RF1-201ENST00000284637 ZNF56Q15929 161 aa13.79□□□□□ -0.2
SH3RF1-201ENST00000284637 GCSAMLQ5JQS6 135 aa13.79□□□□□ -0.2
SH3RF1-201ENST00000284637 TEX45Q8NA69 505 aa13.79□□□□□ -0.2
SH3RF1-201ENST00000284637 TFF1P04155 84 aa13.78□□□□□ -0.2
SH3RF1-201ENST00000284637 MPV17L2Q567V2 206 aa13.78□□□□□ -0.2
SH3RF1-201ENST00000284637 TMEM170BQ5T4T1 132 aa13.78□□□□□ -0.2
SH3RF1-201ENST00000284637 OCC1Q8TAD7 63 aa13.78□□□□□ -0.2
SH3RF1-201ENST00000284637 GTSF1LQ9H1H1 148 aa13.78□□□□□ -0.2
SH3RF1-201ENST00000284637 MRPS16Q9Y3D3 137 aaKnown RBP13.78□□□□□ -0.2
SH3RF1-201ENST00000284637 FDCSPQ8NFU4 85 aa13.78□□□□□ -0.2
SH3RF1-201ENST00000284637 MTCL1Q9Y4B5 1905 aaKnown RBP13.78□□□□□ -0.2
SH3RF1-201ENST00000284637 KBTBD11-OT1A0A1B0GTJ5 212 aa13.78□□□□□ -0.2
SH3RF1-201ENST00000284637 FAM27E3Q08E93 113 aa13.78□□□□□ -0.2
SH3RF1-201ENST00000284637 HSD52Q0P140 79 aa13.78□□□□□ -0.2
SH3RF1-201ENST00000284637 FLVCR1-AS1Q8TAF5 88 aa13.78□□□□□ -0.2
SH3RF1-201ENST00000284637 MRPL20Q9BYC9 149 aaKnown RBP13.78□□□□□ -0.2
SH3RF1-201ENST00000284637 RNF115Q9Y4L5 304 aa13.78□□□□□ -0.2
SH3RF1-201ENST00000284637 LRRC37AA6NMS7 1700 aa13.78□□□□□ -0.2
SH3RF1-201ENST00000284637 LOC105371242A0A075B767 164 aa13.77□□□□□ -0.2
SH3RF1-201ENST00000284637 GNG5P63218 68 aa13.77□□□□□ -0.2
SH3RF1-201ENST00000284637 ATP5G2Q06055 141 aa13.77□□□□□ -0.2
SH3RF1-201ENST00000284637 C10orf126Q8N4M7 172 aa13.77□□□□□ -0.2
SH3RF1-201ENST00000284637 DMRTA2Q96SC8 542 aa13.77□□□□□ -0.2
SH3RF1-201ENST00000284637 CACNA1GO43497 2377 aa13.77□□□□□ -0.2
SH3RF1-201ENST00000284637 CCL1P22362 96 aa13.77□□□□□ -0.2
SH3RF1-201ENST00000284637 FOXC2Q99958 501 aa13.77□□□□□ -0.2
SH3RF1-201ENST00000284637 CYSLTR1Q9Y271 337 aa13.77□□□□□ -0.2
SH3RF1-201ENST00000284637 TMEM262E9PQX1 116 aa13.77□□□□□ -0.21
SH3RF1-201ENST00000284637 RNASE1P07998 156 aaKnown RBP13.77□□□□□ -0.21
SH3RF1-201ENST00000284637 CD33P20138 364 aa13.77□□□□□ -0.21
SH3RF1-201ENST00000284637 AGMATQ9BSE5 352 aa13.77□□□□□ -0.21
SH3RF1-201ENST00000284637 NHP2Q9NX24 153 aaKnown RBP13.77□□□□□ -0.21
SH3RF1-201ENST00000284637 TIMP3P35625 211 aa13.77□□□□□ -0.21
SH3RF1-201ENST00000284637 PAX2Q02962 417 aa13.76□□□□□ -0.21
SH3RF1-201ENST00000284637 MEF2CQ06413 473 aaPredicted RBP13.76□□□□□ -0.21
SH3RF1-201ENST00000284637 IMMP1LQ96LU5 166 aa13.76□□□□□ -0.21
SH3RF1-201ENST00000284637 IGHV3OR16-10A0A075B7F0 116 aa13.76□□□□□ -0.21
SH3RF1-201ENST00000284637 C9JCJ5 164 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms