RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 SFT2D2O95562 160 aa15.65■□□□□ 0.1
SKA3-205ENST00000465471 DUS4LO95620 317 aaKnown RBP15.65■□□□□ 0.1
SKA3-205ENST00000465471 IGLL1P15814 213 aa15.65■□□□□ 0.1
SKA3-205ENST00000465471 ATP5G2Q06055 141 aa15.65■□□□□ 0.1
SKA3-205ENST00000465471 EXOSC2Q13868 293 aaKnown RBP15.65■□□□□ 0.1
SKA3-205ENST00000465471 LGI3Q8N145 548 aa15.65■□□□□ 0.1
SKA3-205ENST00000465471 OR2C3Q8N628 320 aa15.65■□□□□ 0.1
SKA3-205ENST00000465471 RNASE11Q8TAA1 199 aaKnown RBP15.65■□□□□ 0.1
SKA3-205ENST00000465471 FBXL7Q9UJT9 491 aa15.65■□□□□ 0.1
SKA3-205ENST00000465471 F11RQ9Y624 299 aaKnown RBP15.65■□□□□ 0.1
SKA3-205ENST00000465471 DUXBA0A1W2PPF3 345 aa15.64■□□□□ 0.09
SKA3-205ENST00000465471 UPK1BO75841 260 aa15.64■□□□□ 0.09
SKA3-205ENST00000465471 DEFA4P12838 97 aa15.64■□□□□ 0.09
SKA3-205ENST00000465471 MFAP2P55001 183 aa15.64■□□□□ 0.09
SKA3-205ENST00000465471 ANKRD55Q3KP44 614 aa15.64■□□□□ 0.09
SKA3-205ENST00000465471 PDLIM3Q53GG5 364 aaPredicted RBP15.64■□□□□ 0.09
SKA3-205ENST00000465471 OXLD1Q5BKU9 147 aa15.64■□□□□ 0.09
SKA3-205ENST00000465471 LYZL2Q7Z4W2 148 aa15.64■□□□□ 0.09
SKA3-205ENST00000465471 ZNF114Q8NC26 417 aa15.64■□□□□ 0.09
SKA3-205ENST00000465471 OR52E5Q8NH55 327 aa15.64■□□□□ 0.09
SKA3-205ENST00000465471 DPF1Q92782 380 aa15.64■□□□□ 0.09
SKA3-205ENST00000465471 RANGRFQ9HD47 186 aaPredicted RBP15.64■□□□□ 0.09
SKA3-205ENST00000465471 CACNG5Q9UF02 275 aa15.64■□□□□ 0.09
SKA3-205ENST00000465471 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.63■□□□□ 0.09
SKA3-205ENST00000465471 PIGBOS1A0A0B4J2F0 54 aa15.63■□□□□ 0.09
SKA3-205ENST00000465471 TRBV12-3P01733 135 aa15.63■□□□□ 0.09
SKA3-205ENST00000465471 VAMP1P23763 118 aa15.63■□□□□ 0.09
SKA3-205ENST00000465471 SLURP1P55000 103 aa15.63■□□□□ 0.09
SKA3-205ENST00000465471 ASAH1Q13510 395 aa15.63■□□□□ 0.09
SKA3-205ENST00000465471 BEAN1Q3B7T3 259 aa15.63■□□□□ 0.09
SKA3-205ENST00000465471 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.63■□□□□ 0.09
SKA3-205ENST00000465471 PEF1Q9UBV8 284 aaKnown RBP15.63■□□□□ 0.09
SKA3-205ENST00000465471 WIPF1O43516 503 aa15.62■□□□□ 0.09
SKA3-205ENST00000465471 MECP2P51608 486 aaKnown RBP15.62■□□□□ 0.09
SKA3-205ENST00000465471 RAB25P57735 213 aa15.62■□□□□ 0.09
SKA3-205ENST00000465471 IFITM3Q01628 133 aa15.62■□□□□ 0.09
SKA3-205ENST00000465471 FAM209BQ5JX69 171 aa15.62■□□□□ 0.09
SKA3-205ENST00000465471 OR1P1Q8NH06 330 aa15.62■□□□□ 0.09
SKA3-205ENST00000465471 DLX4Q92988 240 aaPredicted RBP15.62■□□□□ 0.09
SKA3-205ENST00000465471 CCDC140Q96MF4 163 aa15.62■□□□□ 0.09
SKA3-205ENST00000465471 MCRIP2Q9BUT9 160 aaKnown RBP15.62■□□□□ 0.09
SKA3-205ENST00000465471 PLEKHA3Q9HB20 300 aa15.62■□□□□ 0.09
SKA3-205ENST00000465471 C9orf170A2RU37 121 aa15.61■□□□□ 0.09
SKA3-205ENST00000465471 ANKRD34BA5PLL1 514 aa15.61■□□□□ 0.09
SKA3-205ENST00000465471 TCRBP04435 133 aa15.61■□□□□ 0.09
SKA3-205ENST00000465471 OR4E1P0C645 316 aa15.61■□□□□ 0.09
SKA3-205ENST00000465471 HOXD3P31249 432 aaPredicted RBP15.61■□□□□ 0.09
SKA3-205ENST00000465471 SPINK9Q5DT21 86 aa15.61■□□□□ 0.09
SKA3-205ENST00000465471 C1QL4Q86Z23 238 aa15.61■□□□□ 0.09
SKA3-205ENST00000465471 OR1L6Q8NGR2 347 aa15.61■□□□□ 0.09
SKA3-205ENST00000465471 DCUN1D4Q92564 292 aa15.61■□□□□ 0.09
SKA3-205ENST00000465471 PDCD10Q9BUL8 212 aa15.61■□□□□ 0.09
SKA3-205ENST00000465471 C20orf85Q9H1P6 137 aa15.61■□□□□ 0.09
SKA3-205ENST00000465471 MFSD2BA6NFX1 497 aa15.6■□□□□ 0.09
SKA3-205ENST00000465471 BMPR1BO00238 502 aa15.6■□□□□ 0.09
SKA3-205ENST00000465471 CYB5BO43169 146 aa15.6■□□□□ 0.09
SKA3-205ENST00000465471 IFNA17P01571 189 aa15.6■□□□□ 0.09
SKA3-205ENST00000465471 HLA-AP01891 365 aaKnown RBP15.6■□□□□ 0.09
SKA3-205ENST00000465471 SULT1A3P0DMM9 295 aa15.6■□□□□ 0.09
SKA3-205ENST00000465471 SULT1A4P0DMN0 295 aa15.6■□□□□ 0.09
SKA3-205ENST00000465471 ANXA7P20073 488 aaKnown RBP15.6■□□□□ 0.09
SKA3-205ENST00000465471 ZP3P21754 424 aa15.6■□□□□ 0.09
SKA3-205ENST00000465471 SPCS3P61009 180 aa15.6■□□□□ 0.09
SKA3-205ENST00000465471 DHRS2Q13268 280 aa15.6■□□□□ 0.09
SKA3-205ENST00000465471 PVRIGQ6DKI7 326 aa15.6■□□□□ 0.09
SKA3-205ENST00000465471 CXorf58Q96LI9 332 aa15.6■□□□□ 0.09
SKA3-205ENST00000465471 THYN1Q9P016 225 aa15.6■□□□□ 0.09
SKA3-205ENST00000465471 SMCO1Q147U7 214 aa15.59■□□□□ 0.09
SKA3-205ENST00000465471 LYG2Q86SG7 212 aa15.59■□□□□ 0.09
SKA3-205ENST00000465471 ZNF502Q8TBZ5 544 aa15.59■□□□□ 0.09
SKA3-205ENST00000465471 VN1R17PQ8TDU5 208 aa15.59■□□□□ 0.09
SKA3-205ENST00000465471 EEF1AKMT3Q96AZ1 226 aa15.59■□□□□ 0.09
SKA3-205ENST00000465471 GPR61Q9BZJ8 451 aa15.59■□□□□ 0.09
SKA3-205ENST00000465471 CACFD1Q9UGQ2 172 aa15.59■□□□□ 0.09
SKA3-205ENST00000465471 TRBV7-1A0A0A6YYK4 115 aa15.58■□□□□ 0.08
SKA3-205ENST00000465471 A0A1B0GU03 582 aa15.58■□□□□ 0.08
SKA3-205ENST00000465471 K7EIM0 57 aa15.58■□□□□ 0.08
SKA3-205ENST00000465471 OVOL1O14753 267 aa15.58■□□□□ 0.08
SKA3-205ENST00000465471 ERHP84090 104 aaKnown RBP15.58■□□□□ 0.08
SKA3-205ENST00000465471 KLF5Q13887 457 aaPredicted RBP15.58■□□□□ 0.08
SKA3-205ENST00000465471 BSXQ3C1V8 233 aa15.58■□□□□ 0.08
SKA3-205ENST00000465471 SLC25A24Q6NUK1 477 aa15.58■□□□□ 0.08
SKA3-205ENST00000465471 TMED3Q9Y3Q3 217 aa15.58■□□□□ 0.08
SKA3-205ENST00000465471 S4R3C0 116 aa15.58■□□□□ 0.08
SKA3-205ENST00000465471 PITX3O75364 302 aa15.57■□□□□ 0.08
SKA3-205ENST00000465471 SLC25A6P12236 298 aa15.57■□□□□ 0.08
SKA3-205ENST00000465471 HOXA1P49639 335 aaPredicted RBP15.57■□□□□ 0.08
SKA3-205ENST00000465471 EGFEM1PQ0D2K5 195 aa15.57■□□□□ 0.08
SKA3-205ENST00000465471 MZT2BQ6NZ67 158 aa15.57■□□□□ 0.08
SKA3-205ENST00000465471 NUDT15Q9NV35 164 aa15.57■□□□□ 0.08
SKA3-205ENST00000465471 HSPB7Q9UBY9 170 aa15.57■□□□□ 0.08
SKA3-205ENST00000465471 FAM240BA0A1B0GVZ2 78 aa15.56■□□□□ 0.08
SKA3-205ENST00000465471 IGHV3-23P01764 117 aa15.56■□□□□ 0.08
SKA3-205ENST00000465471 RNASE2P10153 161 aaKnown RBP15.56■□□□□ 0.08
SKA3-205ENST00000465471 C4orf46Q504U0 113 aa15.56■□□□□ 0.08
SKA3-205ENST00000465471 C9orf66Q5T8R8 295 aa15.56■□□□□ 0.08
SKA3-205ENST00000465471 ACSM6Q6P461 480 aa15.56■□□□□ 0.08
SKA3-205ENST00000465471 ATP6V0BQ99437 205 aa15.56■□□□□ 0.08
SKA3-205ENST00000465471 SEC14L6B5MCN3 397 aa15.55■□□□□ 0.08
SKA3-205ENST00000465471 PPP5D1E7EU14 171 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms