RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ZNF57Q68EA5 555 aaPredicted RBP4.07□□□□□ -1.76
VPS35-205ENST00000563984 AMTNQ6UX39 209 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 ZNF730Q6ZMV8 503 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 Q6ZS92 163 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 TCF23Q7RTU1 214 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 TRPT1Q86TN4 253 aaKnown RBP4.07□□□□□ -1.76
VPS35-205ENST00000563984 SGPP2Q8IWX5 399 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 C1orf174Q8IYL3 243 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 SAXO1Q8IYX7 474 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 ZNF709Q8N972 641 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 SUMF1Q8NBK3 374 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 OR10G6Q8NH81 332 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 VSTM2AQ8TAG5 236 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 C11orf45Q8TAV5 145 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 RAB37Q96AX2 223 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 FMC1Q96HJ9 113 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 KXD1Q9BQD3 176 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 TMEM147Q9BVK8 224 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 ZNF331Q9NQX6 463 aaPredicted RBP4.07□□□□□ -1.76
VPS35-205ENST00000563984 TVP23BQ9NYZ1 205 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 CISD1Q9NZ45 108 aaKnown RBP4.07□□□□□ -1.76
VPS35-205ENST00000563984 WASHC3Q9Y3C0 194 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 FER1L6Q2WGJ9 1857 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 KDM3BQ7LBC6 1761 aa4.07□□□□□ -1.76
VPS35-205ENST00000563984 GPATCH8Q9UKJ3 1502 aaKnown RBP4.06□□□□□ -1.76
VPS35-205ENST00000563984 TECPR2O15040 1411 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 TNS2Q63HR2 1409 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 hCG_1818297A0A087WSY0 165 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 A0A087WYN8 130 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 A0A1B0GWB2 263 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 ARRDC5A6NEK1 342 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 A8MT66 165 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 J3QQQ9 107 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 BMPR1BO00238 502 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 ISLRO14498 428 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 LINC01565O15544 149 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 GSTZ1O43708 216 aaPredicted RBP4.06□□□□□ -1.76
VPS35-205ENST00000563984 YPEL1O60688 119 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 ARL6IP5O75915 188 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 GAS8-AS1O95177 125 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 IGLV2-11P01706 119 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 MT-ND6P03923 174 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 TPT1P13693 172 aaKnown RBP4.06□□□□□ -1.76
VPS35-205ENST00000563984 CD59P13987 128 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 LIFP15018 202 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 COX5AP20674 150 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 PPIBP23284 216 aaKnown RBP4.06□□□□□ -1.76
VPS35-205ENST00000563984 GADD45AP24522 165 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 PGFP49763 221 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 NDUFA8P51970 172 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 H2BFSP57053 126 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 TMEM258P61165 79 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 HERVK_113P63121 156 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 PLGLB1Q02325 96 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 CD226Q15762 336 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 ZNF141Q15928 474 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 PMCHL1Q16048 86 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 GSG1Q2KHT4 349 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 SLC35E4Q6ICL7 350 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 LCN10Q6JVE6 187 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 SHISA6Q6ZSJ9 500 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 C11orf53Q8IXP5 236 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 CIARTQ8N365 385 aaPredicted RBP4.06□□□□□ -1.76
VPS35-205ENST00000563984 ANKRD29Q8N6D5 301 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 OR4F17Q8NGA8 305 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 NT5CQ8TCD5 201 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 SRSF12Q8WXF0 261 aaKnown RBP4.06□□□□□ -1.76
VPS35-205ENST00000563984 S100A16Q96FQ6 103 aaKnown RBP4.06□□□□□ -1.76
VPS35-205ENST00000563984 AQP10Q96PS8 301 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 YPEL2Q96QA6 119 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 OR4F4Q96R69 305 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 SOSTQ9BQB4 213 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 MRPL20Q9BYC9 149 aaKnown RBP4.06□□□□□ -1.76
VPS35-205ENST00000563984 NDUFB11Q9NX14 153 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 ANKRD31Q8N7Z5 1873 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 SHPRHQ149N8 1683 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 SAMD9LQ8IVG5 1584 aa4.06□□□□□ -1.76
VPS35-205ENST00000563984 IGHV4OR15-8A0A075B7B6 117 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 TRAV8-6A0A0B4J262 113 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 C5orf63A6NC05 138 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 SRRM4A7MD48 611 aaKnown RBP4.05□□□□□ -1.76
VPS35-205ENST00000563984 SHISA9B4DS77 424 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 C2CD4DB7Z1M9 353 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 PRAC2D3DTV9 90 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 H7C1H1 209 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 SLC17A2O00624 439 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 GEMIN2O14893 280 aaKnown RBP4.05□□□□□ -1.76
VPS35-205ENST00000563984 NPIPB7O75200 414 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 PROSCO94903 275 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 GYPAP02724 150 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 IL5P05113 134 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 FGF1P05230 155 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 IGKV5-2P06315 115 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 PGA4P0DJD7 388 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 PGA5P0DJD9 388 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 P0DMU3 169 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 FAM231AP0DMU4 169 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 FAM231CP0DMU5 169 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 SLC25A6P12236 298 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 PFN2P35080 140 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms