RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 AKR1C4P17516 323 aa7.88□□□□□ -1.15
VPS28-204ENST00000526054 SRPXP78539 464 aa7.88□□□□□ -1.15
VPS28-204ENST00000526054 SP6Q3SY56 376 aa7.88□□□□□ -1.15
VPS28-204ENST00000526054 C10orf55Q5SWW7 151 aa7.88□□□□□ -1.15
VPS28-204ENST00000526054 THOC7Q6I9Y2 204 aaKnown RBP7.88□□□□□ -1.15
VPS28-204ENST00000526054 Q6ZNX1 250 aa7.88□□□□□ -1.15
VPS28-204ENST00000526054 SLC25A42Q86VD7 318 aa7.88□□□□□ -1.15
VPS28-204ENST00000526054 ADAD2Q8NCV1 583 aaKnown RBP7.88□□□□□ -1.15
VPS28-204ENST00000526054 TMEM230Q96A57 120 aa7.88□□□□□ -1.15
VPS28-204ENST00000526054 GALNT14Q96FL9 552 aa7.88□□□□□ -1.15
VPS28-204ENST00000526054 SEC22AQ96IW7 307 aa7.88□□□□□ -1.15
VPS28-204ENST00000526054 FYTTD1Q96QD9 318 aaKnown RBP7.88□□□□□ -1.15
VPS28-204ENST00000526054 TMEM222Q9H0R3 208 aa7.88□□□□□ -1.15
VPS28-204ENST00000526054 C20orf85Q9H1P6 137 aa7.88□□□□□ -1.15
VPS28-204ENST00000526054 ZNF355PQ9NSJ1 428 aa7.88□□□□□ -1.15
VPS28-204ENST00000526054 FKBP11Q9NYL4 201 aa7.88□□□□□ -1.15
VPS28-204ENST00000526054 PRNDQ9UKY0 176 aa7.88□□□□□ -1.15
VPS28-204ENST00000526054 TRAV6A0A075B6T7 132 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 TRAV3A0A0B4J244 114 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 CCL24O00175 119 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 SOX15O60248 233 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 IGKV1-39P01597 117 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 IGKV1D-39P04432 117 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 H2AFB2P0C5Z0 115 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 OR9G9P0C7N8 305 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 APELAP0DMC3 54 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 RAB9AP51151 201 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 TPPP2P59282 170 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 DEFB136Q30KP8 78 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 TMEM128Q5BJH2 165 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 ASPHD1Q5U4P2 390 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 LCNL1Q6ZST4 164 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 OR5T1Q8NG75 326 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 OR1L8Q8NGR8 309 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 OR4A16Q8NH70 328 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 RBPMSQ93062 196 aaKnown RBP7.87□□□□□ -1.15
VPS28-204ENST00000526054 RRNAD1Q96FB5 475 aaKnown RBP7.87□□□□□ -1.15
VPS28-204ENST00000526054 RAX2Q96IS3 184 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 SRSF8Q9BRL6 282 aaKnown RBP7.87□□□□□ -1.15
VPS28-204ENST00000526054 MARVELD1Q9BSK0 173 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 SLA2Q9H6Q3 261 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 COA4Q9NYJ1 87 aa7.87□□□□□ -1.15
VPS28-204ENST00000526054 C15orf61A6NNL5 157 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 TEX22C9J3V5 150 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 INMT-MINDY4F8WBC2 141 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 RBMXL2O75526 392 aaKnown RBP7.86□□□□□ -1.15
VPS28-204ENST00000526054 CDS2O95674 445 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 DHFRP00374 187 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 IGKV1-5P01602 117 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 TRGV3P03979 118 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 VAMP1P23763 118 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 CDX1P47902 265 aaPredicted RBP7.86□□□□□ -1.15
VPS28-204ENST00000526054 OR2B8PP59922 312 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 UBE2MP61081 183 aaKnown RBP7.86□□□□□ -1.15
VPS28-204ENST00000526054 TMEM268Q5VZI3 342 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 HSD17B13Q7Z5P4 300 aaPredicted RBP7.86□□□□□ -1.15
VPS28-204ENST00000526054 FAM219AQ8IW50 185 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 OR5B3Q8NH48 314 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 MYOZ3Q8TDC0 251 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 GLYATL2Q8WU03 294 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 IL22RA2Q969J5 263 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 UBE2E2Q96LR5 201 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 QTRT1Q9BXR0 403 aaKnown RBP7.86□□□□□ -1.15
VPS28-204ENST00000526054 KLK15Q9H2R5 256 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 ZNF257Q9Y2Q1 563 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 NSG2Q9Y328 171 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 OR51B2Q9Y5P1 312 aa7.86□□□□□ -1.15
VPS28-204ENST00000526054 HMX3A6NHT5 357 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 NPIPB5A8MRT5 1133 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 PRAF2O60831 178 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 BRI3O95415 125 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 TRAPPC2P0DI81 140 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 TRAPPC2BP0DI82 140 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 MYOD1P15172 320 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 SUPT4H1P63272 117 aaKnown RBP7.85□□□□□ -1.15
VPS28-204ENST00000526054 TMEM187Q14656 261 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 C9orf66Q5T8R8 295 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 SELENOHQ8IZQ5 122 aaKnown RBP7.85□□□□□ -1.15
VPS28-204ENST00000526054 LGI3Q8N145 548 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 TTC9CQ8N5M4 171 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 ZNF491Q8N8L2 437 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 LHFPL5Q8TAF8 219 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 CASTOR1Q8WTX7 329 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 C4orf3Q8WVX3 66 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 LSM10Q969L4 123 aaKnown RBP7.85□□□□□ -1.15
VPS28-204ENST00000526054 TMEM56Q96MV1 263 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 MS4A10Q96PG2 267 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 PDCD10Q9BUL8 212 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 HINT2Q9BX68 163 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 TMEM14BQ9NUH8 114 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 TMEM56-RWDD3S4R434 201 aa7.85□□□□□ -1.15
VPS28-204ENST00000526054 hCG_2014768A0A024R1R8 64 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 A0A0B4J2A0 478 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 A0A0G2JLM5 398 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 TEX50A0A1B0GTY4 177 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 C13orf42A0A1B0GVH6 325 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 A0A1B0GW64 132 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 DUXBA0A1W2PPF3 345 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 SEC14L6B5MCN3 397 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 E7EUB6 86 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms