RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 MEGF8Q7Z7M0 2845 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 TEX13DA0A0J9YY54 714 aaPredicted RBP13.1□□□□□ -0.31
CLN3-203ENST00000357806 TEX50A0A1B0GTY4 177 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 IGLC7A0M8Q6 106 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 REG1AP05451 166 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 TRAPPC2P0DI81 140 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 TRAPPC2BP0DI82 140 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 UCP1P25874 307 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 TRIQKQ629K1 86 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 ZNF57Q68EA5 555 aaPredicted RBP13.1□□□□□ -0.31
CLN3-203ENST00000357806 NECAP1Q8NC96 275 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 OR5B3Q8NH48 314 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 OR4A16Q8NH70 328 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 RANGRFQ9HD47 186 aaPredicted RBP13.1□□□□□ -0.31
CLN3-203ENST00000357806 TMEM14BQ9NUH8 114 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 CRYM-AS1A6NIL9 109 aa13.09□□□□□ -0.31
CLN3-203ENST00000357806 RBMXL2O75526 392 aaKnown RBP13.09□□□□□ -0.31
CLN3-203ENST00000357806 OR2J3O76001 311 aa13.09□□□□□ -0.31
CLN3-203ENST00000357806 OR5AC1P0C628 307 aa13.09□□□□□ -0.31
CLN3-203ENST00000357806 DEFA4P12838 97 aa13.09□□□□□ -0.31
CLN3-203ENST00000357806 HIST1H1BP16401 226 aaKnown RBP13.09□□□□□ -0.31
CLN3-203ENST00000357806 INPP1P49441 399 aa13.09□□□□□ -0.31
CLN3-203ENST00000357806 SLURP1P55000 103 aa13.09□□□□□ -0.31
CLN3-203ENST00000357806 EXOSC2Q13868 293 aaKnown RBP13.09□□□□□ -0.31
CLN3-203ENST00000357806 SP6Q3SY56 376 aa13.09□□□□□ -0.31
CLN3-203ENST00000357806 ZNF343Q6P1L6 599 aa13.09□□□□□ -0.31
CLN3-203ENST00000357806 LSM10Q969L4 123 aaKnown RBP13.09□□□□□ -0.31
CLN3-203ENST00000357806 NDUFA4L2Q9NRX3 87 aa13.09□□□□□ -0.31
CLN3-203ENST00000357806 ANKRD34BA5PLL1 514 aa13.08□□□□□ -0.32
CLN3-203ENST00000357806 ZP3P21754 424 aa13.08□□□□□ -0.32
CLN3-203ENST00000357806 ATP5G2Q06055 141 aa13.08□□□□□ -0.32
CLN3-203ENST00000357806 C15orf32Q32M92 178 aa13.08□□□□□ -0.32
CLN3-203ENST00000357806 C9orf66Q5T8R8 295 aa13.08□□□□□ -0.32
CLN3-203ENST00000357806 C19orf35Q6ZS72 473 aa13.08□□□□□ -0.32
CLN3-203ENST00000357806 SGPP2Q8IWX5 399 aa13.08□□□□□ -0.32
CLN3-203ENST00000357806 OR10W1Q8NGF6 305 aa13.08□□□□□ -0.32
CLN3-203ENST00000357806 DCUN1D4Q92564 292 aa13.08□□□□□ -0.32
CLN3-203ENST00000357806 TMEM56Q96MV1 263 aa13.08□□□□□ -0.32
CLN3-203ENST00000357806 HINT2Q9BX68 163 aa13.08□□□□□ -0.32
CLN3-203ENST00000357806 TMEM222Q9H0R3 208 aa13.08□□□□□ -0.32
CLN3-203ENST00000357806 PEF1Q9UBV8 284 aaKnown RBP13.08□□□□□ -0.32
CLN3-203ENST00000357806 SEC14L6B5MCN3 397 aa13.07□□□□□ -0.32
CLN3-203ENST00000357806 OVOL1O14753 267 aa13.07□□□□□ -0.32
CLN3-203ENST00000357806 CYB5BO43169 146 aa13.07□□□□□ -0.32
CLN3-203ENST00000357806 IGKV1-5P01602 117 aa13.07□□□□□ -0.32
CLN3-203ENST00000357806 DHODHQ02127 395 aa13.07□□□□□ -0.32
CLN3-203ENST00000357806 FAM209BQ5JX69 171 aa13.07□□□□□ -0.32
CLN3-203ENST00000357806 REC114Q7Z4M0 266 aa13.07□□□□□ -0.32
CLN3-203ENST00000357806 RNASE11Q8TAA1 199 aaKnown RBP13.07□□□□□ -0.32
CLN3-203ENST00000357806 RRNAD1Q96FB5 475 aaKnown RBP13.07□□□□□ -0.32
CLN3-203ENST00000357806 FANCD2OSQ96PS1 177 aa13.07□□□□□ -0.32
CLN3-203ENST00000357806 FBXL7Q9UJT9 491 aa13.07□□□□□ -0.32
CLN3-203ENST00000357806 DBX1A6NMT0 343 aa13.06□□□□□ -0.32
CLN3-203ENST00000357806 WIPF1O43516 503 aa13.06□□□□□ -0.32
CLN3-203ENST00000357806 CDS2O95674 445 aa13.06□□□□□ -0.32
CLN3-203ENST00000357806 HOXD3P31249 432 aaPredicted RBP13.06□□□□□ -0.32
CLN3-203ENST00000357806 MECP2P51608 486 aaKnown RBP13.06□□□□□ -0.32
CLN3-203ENST00000357806 WT1-ASQ06250 92 aa13.06□□□□□ -0.32
CLN3-203ENST00000357806 BAK1Q16611 211 aa13.06□□□□□ -0.32
CLN3-203ENST00000357806 KLK9Q2XQG4 91 aa13.06□□□□□ -0.32
CLN3-203ENST00000357806 GLYATL2Q8WU03 294 aa13.06□□□□□ -0.32
CLN3-203ENST00000357806 DLX4Q92988 240 aaPredicted RBP13.06□□□□□ -0.32
CLN3-203ENST00000357806 KLK9Q9UKQ9 250 aa13.06□□□□□ -0.32
CLN3-203ENST00000357806 KCNIP3Q9Y2W7 256 aa13.06□□□□□ -0.32
CLN3-203ENST00000357806 IGLV11-55A0A075B6I3 123 aa13.05□□□□□ -0.32
CLN3-203ENST00000357806 A6NHS1 94 aa13.05□□□□□ -0.32
CLN3-203ENST00000357806 P0C879 139 aa13.05□□□□□ -0.32
CLN3-203ENST00000357806 OR13C7P0DN81 318 aa13.05□□□□□ -0.32
CLN3-203ENST00000357806 EGFEM1PQ0D2K5 195 aa13.05□□□□□ -0.32
CLN3-203ENST00000357806 ZNF429Q86V71 674 aa13.05□□□□□ -0.32
CLN3-203ENST00000357806 RBPMSQ93062 196 aaKnown RBP13.05□□□□□ -0.32
CLN3-203ENST00000357806 TMEM230Q96A57 120 aa13.05□□□□□ -0.32
CLN3-203ENST00000357806 GALNT14Q96FL9 552 aa13.05□□□□□ -0.32
CLN3-203ENST00000357806 SLC25A21Q9BQT8 299 aaPredicted RBP13.05□□□□□ -0.32
CLN3-203ENST00000357806 THYN1Q9P016 225 aa13.05□□□□□ -0.32
CLN3-203ENST00000357806 TRBV12-3P01733 135 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 AKR1C4P17516 323 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 PRCDQ00LT1 54 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 IZUMO4Q1ZYL8 232 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 FAM219AQ8IW50 185 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 SDHCQ99643 169 aaPredicted RBP13.04□□□□□ -0.32
CLN3-203ENST00000357806 PDCD10Q9BUL8 212 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 ZMAT5Q9UDW3 170 aaKnown RBP13.04□□□□□ -0.32
CLN3-203ENST00000357806 DNAH3Q8TD57 4116 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.04□□□□□ -0.32
CLN3-203ENST00000357806 NAP1L6A6NFF2 107 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 NDUFB8O95169 186 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 PRB2P02812 416 aaPredicted RBP13.04□□□□□ -0.32
CLN3-203ENST00000357806 ANXA3P12429 323 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 INSL3P51460 131 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 HSPE1P61604 102 aaKnown RBP13.04□□□□□ -0.32
CLN3-203ENST00000357806 RBMS2Q15434 407 aaKnown RBP13.04□□□□□ -0.32
CLN3-203ENST00000357806 RPEL1Q2QD12 228 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 CNPY1Q3B7I2 92 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 PDLIM3Q53GG5 364 aaPredicted RBP13.04□□□□□ -0.32
CLN3-203ENST00000357806 TMEM268Q5VZI3 342 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 LINC00299Q6ZSB3 139 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 TMED4Q7Z7H5 227 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 LHFPL5Q8TAF8 219 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 EEF1AKMT3Q96AZ1 226 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms