RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 TRIM63Q969Q1 353 aa11.28□□□□□ -0.6
VRK3-206ENST00000594090 ALX4Q9H161 411 aaPredicted RBP11.28□□□□□ -0.6
VRK3-206ENST00000594090 HMX3A6NHT5 357 aa11.27□□□□□ -0.6
VRK3-206ENST00000594090 KRASP01116 189 aa11.27□□□□□ -0.6
VRK3-206ENST00000594090 IGHV3-11P01762 117 aa11.27□□□□□ -0.6
VRK3-206ENST00000594090 FGF2P09038 288 aa11.27□□□□□ -0.6
VRK3-206ENST00000594090 PTBP1P26599 531 aaKnown RBP eCLIP11.27□□□□□ -0.6
VRK3-206ENST00000594090 G6PCP35575 357 aa11.27□□□□□ -0.6
VRK3-206ENST00000594090 ECI1P42126 302 aa11.27□□□□□ -0.6
VRK3-206ENST00000594090 ZNF616Q08AN1 781 aa11.27□□□□□ -0.6
VRK3-206ENST00000594090 PYDC2Q56P42 97 aa11.27□□□□□ -0.6
VRK3-206ENST00000594090 OR1N2Q8NGR9 330 aa11.27□□□□□ -0.6
VRK3-206ENST00000594090 ZFAND1Q8TCF1 268 aa11.27□□□□□ -0.6
VRK3-206ENST00000594090 MARCH1Q8TCQ1 289 aa11.27□□□□□ -0.6
VRK3-206ENST00000594090 FYTTD1Q96QD9 318 aaKnown RBP11.27□□□□□ -0.6
VRK3-206ENST00000594090 THAP7Q9BT49 309 aaPredicted RBP11.27□□□□□ -0.6
VRK3-206ENST00000594090 CGB1A6NKQ9 187 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 OR8U8P0C7N1 319 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 ETV6P41212 452 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 DEFA5Q01523 94 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 CADM3Q8N126 398 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 Q8N402 240 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 TTC9CQ8N5M4 171 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 CCDC71LQ8N9Z2 235 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 OR51S1Q8NGJ8 323 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 PRRT1Q99946 306 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 SLC2A8Q9NY64 477 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 ZNF257Q9Y2Q1 563 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 IGHV4OR15-8A0A075B7B6 117 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 A0A087WW49 117 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 A0A0G2JLM5 398 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 C13orf42A0A1B0GVH6 325 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 NPIPB5A8MRT5 1133 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 H0Y980 276 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 RBMXL2O75526 392 aaKnown RBP11.26□□□□□ -0.61
VRK3-206ENST00000594090 IGKV1-39P01597 117 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 PRH1P02810 166 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 IGKV1D-39P04432 117 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 CTSDP07339 412 aaPredicted RBP11.26□□□□□ -0.61
VRK3-206ENST00000594090 OR2B8PP59922 312 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 SURF2Q15527 256 aaPredicted RBP11.26□□□□□ -0.61
VRK3-206ENST00000594090 SPANXN2Q5MJ10 180 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 SLC25A42Q86VD7 318 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 OR6Q1Q8NGQ2 317 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 DPF1Q92782 380 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 TP53RKQ96S44 253 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 MCRIP2Q9BUT9 160 aaKnown RBP11.26□□□□□ -0.61
VRK3-206ENST00000594090 COMMD5Q9GZQ3 224 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 COPZ2Q9P299 210 aa11.26□□□□□ -0.61
VRK3-206ENST00000594090 C3orf85A0A1B0GTC6 90 aa11.25□□□□□ -0.61
VRK3-206ENST00000594090 SERPINE2P07093 398 aa11.25□□□□□ -0.61
VRK3-206ENST00000594090 AREGP15514 252 aa11.25□□□□□ -0.61
VRK3-206ENST00000594090 RHOGP84095 191 aa11.25□□□□□ -0.61
VRK3-206ENST00000594090 ZNF45Q02386 682 aa11.25□□□□□ -0.61
VRK3-206ENST00000594090 KLF9Q13886 244 aaPredicted RBP11.25□□□□□ -0.61
VRK3-206ENST00000594090 SEC22AQ96IW7 307 aa11.25□□□□□ -0.61
VRK3-206ENST00000594090 USMG5Q96IX5 58 aa11.25□□□□□ -0.61
VRK3-206ENST00000594090 C14orf166Q9Y224 244 aaKnown RBP11.25□□□□□ -0.61
VRK3-206ENST00000594090 MEGF8Q7Z7M0 2845 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 TRBV9A0A0B4J1U6 114 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 FAM223BA6NKX1 122 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 LINC01619G3V211 115 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 SNAPC5O75971 98 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 HSPB1P04792 205 aaKnown RBP11.24□□□□□ -0.61
VRK3-206ENST00000594090 CTRB1P17538 263 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 PSMB6P28072 239 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 FAUP35544 74 aaKnown RBP11.24□□□□□ -0.61
VRK3-206ENST00000594090 AP3S2P59780 193 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 CTRB2Q6GPI1 263 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 C19orf35Q6ZS72 473 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 FAM223AQ8IWN6 122 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 RTBDNQ9BSG5 229 aaPredicted RBP11.24□□□□□ -0.61
VRK3-206ENST00000594090 QTRT1Q9BXR0 403 aaKnown RBP11.24□□□□□ -0.61
VRK3-206ENST00000594090 GPR61Q9BZJ8 451 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 SRRQ9GZT4 340 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 C5orf66Q9H5L9 145 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 AKIP1Q9NQ31 210 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 MCUBQ9NWR8 336 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 SCP2D1Q9UJQ7 156 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 GPR132Q9UNW8 380 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 NSG2Q9Y328 171 aa11.24□□□□□ -0.61
VRK3-206ENST00000594090 IGLC7A0M8Q6 106 aa11.23□□□□□ -0.61
VRK3-206ENST00000594090 REG1AP05451 166 aa11.23□□□□□ -0.61
VRK3-206ENST00000594090 CRYGCP07315 174 aa11.23□□□□□ -0.61
VRK3-206ENST00000594090 SLURP1P55000 103 aa11.23□□□□□ -0.61
VRK3-206ENST00000594090 THOC7Q6I9Y2 204 aaKnown RBP11.23□□□□□ -0.61
VRK3-206ENST00000594090 ZNF343Q6P1L6 599 aa11.23□□□□□ -0.61
VRK3-206ENST00000594090 H2BFWTQ7Z2G1 175 aa11.23□□□□□ -0.61
VRK3-206ENST00000594090 TOMM5Q8N4H5 51 aa11.23□□□□□ -0.61
VRK3-206ENST00000594090 GDPD1Q8N9F7 314 aa11.23□□□□□ -0.61
VRK3-206ENST00000594090 TSC22D3Q99576 134 aa11.23□□□□□ -0.61
VRK3-206ENST00000594090 SRSF8Q9BRL6 282 aaKnown RBP11.23□□□□□ -0.61
VRK3-206ENST00000594090 PRNDQ9UKY0 176 aa11.23□□□□□ -0.61
VRK3-206ENST00000594090 TEX50A0A1B0GTY4 177 aa11.22□□□□□ -0.61
VRK3-206ENST00000594090 C15orf61A6NNL5 157 aa11.22□□□□□ -0.61
VRK3-206ENST00000594090 B3GALNT1O75752 331 aa11.22□□□□□ -0.61
VRK3-206ENST00000594090 DHFRP00374 187 aa11.22□□□□□ -0.61
VRK3-206ENST00000594090 UCP1P25874 307 aa11.22□□□□□ -0.61
VRK3-206ENST00000594090 SP6Q3SY56 376 aa11.22□□□□□ -0.61
VRK3-206ENST00000594090 NECAP1Q8NC96 275 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms