RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 PLA2G7Q13093 441 aa11.25□□□□□ -0.61
CLSTN3-216ENST00000545663 EXOSC2Q13868 293 aaKnown RBP11.25□□□□□ -0.61
CLSTN3-216ENST00000545663 ZNF880Q6PDB4 577 aa11.25□□□□□ -0.61
CLSTN3-216ENST00000545663 BTNL8Q6UX41 500 aa11.25□□□□□ -0.61
CLSTN3-216ENST00000545663 Q6ZR54 194 aa11.25□□□□□ -0.61
CLSTN3-216ENST00000545663 Q6ZS49 121 aa11.25□□□□□ -0.61
CLSTN3-216ENST00000545663 LINC00299Q6ZSB3 139 aa11.25□□□□□ -0.61
CLSTN3-216ENST00000545663 UXS1Q8NBZ7 420 aa11.25□□□□□ -0.61
CLSTN3-216ENST00000545663 OR11H2Q8NH07 326 aa11.25□□□□□ -0.61
CLSTN3-216ENST00000545663 MRPL30Q8TCC3 161 aaKnown RBP11.25□□□□□ -0.61
CLSTN3-216ENST00000545663 GALMQ96C23 342 aa11.25□□□□□ -0.61
CLSTN3-216ENST00000545663 DCUN1D5Q9BTE7 237 aa11.25□□□□□ -0.61
CLSTN3-216ENST00000545663 AUNIPQ9H7T9 357 aa11.25□□□□□ -0.61
CLSTN3-216ENST00000545663 SCPEP1Q9HB40 452 aa11.25□□□□□ -0.61
CLSTN3-216ENST00000545663 TAF9BQ9HBM6 251 aa11.25□□□□□ -0.61
CLSTN3-216ENST00000545663 TMEM213A2RRL7 107 aa11.24□□□□□ -0.61
CLSTN3-216ENST00000545663 SULT1C2O00338 296 aa11.24□□□□□ -0.61
CLSTN3-216ENST00000545663 SHOXO15266 292 aa11.24□□□□□ -0.61
CLSTN3-216ENST00000545663 CTXN2P0C2S0 81 aa11.24□□□□□ -0.61
CLSTN3-216ENST00000545663 ELK1P19419 428 aa11.24□□□□□ -0.61
CLSTN3-216ENST00000545663 LINC00205P59089 165 aa11.24□□□□□ -0.61
CLSTN3-216ENST00000545663 RHOGP84095 191 aa11.24□□□□□ -0.61
CLSTN3-216ENST00000545663 OR1L6Q8NGR2 347 aa11.24□□□□□ -0.61
CLSTN3-216ENST00000545663 IFI27L2Q9H2X8 130 aa11.24□□□□□ -0.61
CLSTN3-216ENST00000545663 KCNK7Q9Y2U2 307 aa11.24□□□□□ -0.61
CLSTN3-216ENST00000545663 FAT1Q14517 4588 aa11.23□□□□□ -0.61
CLSTN3-216ENST00000545663 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-216ENST00000545663 C11orf94C9JXX5 98 aa11.23□□□□□ -0.61
CLSTN3-216ENST00000545663 ST8SIA5O15466 376 aa11.23□□□□□ -0.61
CLSTN3-216ENST00000545663 IGKV1-16P04430 117 aa11.23□□□□□ -0.61
CLSTN3-216ENST00000545663 EIF4EP06730 217 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-216ENST00000545663 RBMY1A1P0DJD3 496 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-216ENST00000545663 PRSS3P35030 304 aa11.23□□□□□ -0.61
CLSTN3-216ENST00000545663 TAS2R20P59543 309 aa11.23□□□□□ -0.61
CLSTN3-216ENST00000545663 HTD2P86397 168 aa11.23□□□□□ -0.61
CLSTN3-216ENST00000545663 OR2C3Q8N628 320 aa11.23□□□□□ -0.61
CLSTN3-216ENST00000545663 SETD6Q8TBK2 473 aa11.23□□□□□ -0.61
CLSTN3-216ENST00000545663 DIRAS2Q96HU8 199 aa11.23□□□□□ -0.61
CLSTN3-216ENST00000545663 Q9N2K0 584 aa11.23□□□□□ -0.61
CLSTN3-216ENST00000545663 EXTL2Q9UBQ6 330 aa11.23□□□□□ -0.61
CLSTN3-216ENST00000545663 WASHC3Q9Y3C0 194 aa11.23□□□□□ -0.61
CLSTN3-216ENST00000545663 TMEM235A6NFC5 223 aa11.22□□□□□ -0.61
CLSTN3-216ENST00000545663 TRDCB7Z8K6 153 aa11.22□□□□□ -0.61
CLSTN3-216ENST00000545663 LGALS9O00182 355 aa11.22□□□□□ -0.61
CLSTN3-216ENST00000545663 CTDSP2O14595 271 aa11.22□□□□□ -0.61
CLSTN3-216ENST00000545663 FCGR3AP08637 254 aa11.22□□□□□ -0.61
CLSTN3-216ENST00000545663 PTBP1P26599 531 aaKnown RBP eCLIP11.22□□□□□ -0.614e-6■■□□□ 11.8
CLSTN3-216ENST00000545663 TNP2Q05952 138 aa11.22□□□□□ -0.61
CLSTN3-216ENST00000545663 ATP5G2Q06055 141 aa11.22□□□□□ -0.61
CLSTN3-216ENST00000545663 HMGN3Q15651 99 aa11.22□□□□□ -0.61
CLSTN3-216ENST00000545663 LY6G6FQ5SQ64 297 aa11.22□□□□□ -0.61
CLSTN3-216ENST00000545663 DRAXINQ8NBI3 349 aaPredicted RBP11.22□□□□□ -0.61
CLSTN3-216ENST00000545663 ADAD2Q8NCV1 583 aaKnown RBP11.22□□□□□ -0.61
CLSTN3-216ENST00000545663 OR4A4PQ8NGN8 299 aa11.22□□□□□ -0.61
CLSTN3-216ENST00000545663 OR5B3Q8NH48 314 aa11.22□□□□□ -0.61
CLSTN3-216ENST00000545663 CCDC140Q96MF4 163 aa11.22□□□□□ -0.61
CLSTN3-216ENST00000545663 JPT1Q9UK76 154 aa11.22□□□□□ -0.61
CLSTN3-216ENST00000545663 MRPS7Q9Y2R9 242 aaKnown RBP11.22□□□□□ -0.61
CLSTN3-216ENST00000545663 ZNF320A2RRD8 509 aa11.21□□□□□ -0.61
CLSTN3-216ENST00000545663 OR5H14A6NHG9 310 aa11.21□□□□□ -0.61
CLSTN3-216ENST00000545663 RBBP9O75884 186 aa11.21□□□□□ -0.61
CLSTN3-216ENST00000545663 HLA-DMBP28068 263 aa11.21□□□□□ -0.61
CLSTN3-216ENST00000545663 MC5RP33032 325 aa11.21□□□□□ -0.61
CLSTN3-216ENST00000545663 HLA-DRB3P79483 266 aa11.21□□□□□ -0.61
CLSTN3-216ENST00000545663 SSBP1Q04837 148 aaKnown RBP11.21□□□□□ -0.61
CLSTN3-216ENST00000545663 ODF3L2Q3SX64 289 aa11.21□□□□□ -0.61
CLSTN3-216ENST00000545663 SPANXN2Q5MJ10 180 aa11.21□□□□□ -0.61
CLSTN3-216ENST00000545663 PVRIGQ6DKI7 326 aa11.21□□□□□ -0.61
CLSTN3-216ENST00000545663 CNIH2Q6PI25 160 aa11.21□□□□□ -0.61
CLSTN3-216ENST00000545663 Q6ZTC4 211 aa11.21□□□□□ -0.61
CLSTN3-216ENST00000545663 OR5AN1Q8NGI8 311 aa11.21□□□□□ -0.61
CLSTN3-216ENST00000545663 IFT46Q9NQC8 304 aa11.21□□□□□ -0.61
CLSTN3-216ENST00000545663 FLG2Q5D862 2391 aaPredicted RBP11.21□□□□□ -0.62
CLSTN3-216ENST00000545663 FABP12A6NFH5 140 aa11.2□□□□□ -0.62
CLSTN3-216ENST00000545663 EPM2AB3EWF7 344 aa11.2□□□□□ -0.62
CLSTN3-216ENST00000545663 FABP7O15540 132 aa11.2□□□□□ -0.62
CLSTN3-216ENST00000545663 P0DMU3 169 aa11.2□□□□□ -0.62
CLSTN3-216ENST00000545663 FAM231AP0DMU4 169 aa11.2□□□□□ -0.62
CLSTN3-216ENST00000545663 FAM231CP0DMU5 169 aa11.2□□□□□ -0.62
CLSTN3-216ENST00000545663 ZBTB25P24278 435 aa11.2□□□□□ -0.62
CLSTN3-216ENST00000545663 RBPMS2Q6ZRY4 209 aaKnown RBP11.2□□□□□ -0.62
CLSTN3-216ENST00000545663 OR2AK2Q8NG84 335 aa11.2□□□□□ -0.62
CLSTN3-216ENST00000545663 EDARADDQ8WWZ3 215 aa11.2□□□□□ -0.62
CLSTN3-216ENST00000545663 RNF5Q99942 180 aa11.2□□□□□ -0.62
CLSTN3-216ENST00000545663 SCRT1Q9BWW7 348 aa11.2□□□□□ -0.62
CLSTN3-216ENST00000545663 MIXL1Q9H2W2 232 aa11.2□□□□□ -0.62
CLSTN3-216ENST00000545663 VPS13BQ7Z7G8 4022 aa11.19□□□□□ -0.62
CLSTN3-216ENST00000545663 ITGB1BP1O14713 200 aa11.19□□□□□ -0.62
CLSTN3-216ENST00000545663 CTDSPLO15194 276 aa11.19□□□□□ -0.62
CLSTN3-216ENST00000545663 YPEL1O60688 119 aa11.19□□□□□ -0.62
CLSTN3-216ENST00000545663 GGCTO75223 188 aaKnown RBP11.19□□□□□ -0.62
CLSTN3-216ENST00000545663 HLA-DQB1P01920 261 aa11.19□□□□□ -0.62
CLSTN3-216ENST00000545663 TNFSF8P32971 234 aa11.19□□□□□ -0.62
CLSTN3-216ENST00000545663 TAS2R46P59540 309 aa11.19□□□□□ -0.62
CLSTN3-216ENST00000545663 ZNF124Q15973 351 aa11.19□□□□□ -0.62
CLSTN3-216ENST00000545663 SOHLH1Q5JUK2 328 aa11.19□□□□□ -0.62
CLSTN3-216ENST00000545663 C1orf134Q5TEV5 83 aa11.19□□□□□ -0.62
CLSTN3-216ENST00000545663 HOGA1Q86XE5 327 aa11.19□□□□□ -0.62
CLSTN3-216ENST00000545663 SLC38A6Q8IZM9 456 aa11.19□□□□□ -0.62
CLSTN3-216ENST00000545663 OR4A5Q8NH83 315 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms