RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 RETNQ9HD89 108 aa11.13□□□□□ -0.63
VPS28-215ENST00000531924 BET1LQ9NYM9 111 aa11.13□□□□□ -0.63
VPS28-215ENST00000531924 THYN1Q9P016 225 aa11.13□□□□□ -0.63
VPS28-215ENST00000531924 TRBV7-1A0A0A6YYK4 115 aa11.12□□□□□ -0.63
VPS28-215ENST00000531924 E7EUB6 86 aa11.12□□□□□ -0.63
VPS28-215ENST00000531924 RBFOX2O43251 390 aaKnown RBP eCLIP11.12□□□□□ -0.639e-10■■■□□ 18.7
VPS28-215ENST00000531924 PTHLHP12272 177 aa11.12□□□□□ -0.63
VPS28-215ENST00000531924 NQO2P16083 231 aa11.12□□□□□ -0.63
VPS28-215ENST00000531924 CBX5P45973 191 aa11.12□□□□□ -0.63
VPS28-215ENST00000531924 BRWD1-AS2P59051 145 aa11.12□□□□□ -0.63
VPS28-215ENST00000531924 TAS2R31P59538 309 aa11.12□□□□□ -0.63
VPS28-215ENST00000531924 ANKRD55Q3KP44 614 aa11.12□□□□□ -0.63
VPS28-215ENST00000531924 TIMM50Q3ZCQ8 353 aa11.12□□□□□ -0.63
VPS28-215ENST00000531924 ZNF57Q68EA5 555 aaPredicted RBP11.12□□□□□ -0.63
VPS28-215ENST00000531924 DMBX1Q8NFW5 382 aa11.12□□□□□ -0.63
VPS28-215ENST00000531924 OR52B4Q8NGK2 314 aa11.12□□□□□ -0.63
VPS28-215ENST00000531924 OR5H6Q8NGV6 325 aa11.12□□□□□ -0.63
VPS28-215ENST00000531924 CD300LFQ8TDQ1 290 aa11.12□□□□□ -0.63
VPS28-215ENST00000531924 BORCS5Q969J3 196 aa11.12□□□□□ -0.63
VPS28-215ENST00000531924 WDR89Q96FK6 387 aaPredicted RBP11.12□□□□□ -0.63
VPS28-215ENST00000531924 FANCD2OSQ96PS1 177 aa11.12□□□□□ -0.63
VPS28-215ENST00000531924 HIPK2Q9H2X6 1198 aa11.12□□□□□ -0.63
VPS28-215ENST00000531924 IFT46Q9NQC8 304 aa11.12□□□□□ -0.63
VPS28-215ENST00000531924 JTBO76095 146 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 HPRT1P00492 218 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 CLEC3BP05452 202 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 MYOD1P15172 320 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 CTRB1P17538 263 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 ERVK-16P61578 105 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 NEDD8Q15843 81 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 AADACL3Q5VUY0 350 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 CTRB2Q6GPI1 263 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 TMEM17Q86X19 198 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 UXS1Q8NBZ7 420 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 OR51H1Q8NH63 302 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 CACNG8Q8WXS5 425 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 SLC25A38Q96DW6 304 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 CCDC140Q96MF4 163 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 AUNIPQ9H7T9 357 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 ZC4H2Q9NQZ6 224 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 SELENOKQ9Y6D0 94 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 TNCP24821 2201 aa11.11□□□□□ -0.63
VPS28-215ENST00000531924 A0A1B0GW64 132 aa11.1□□□□□ -0.63
VPS28-215ENST00000531924 RBMY1BA6NDE4 496 aaKnown RBP11.1□□□□□ -0.63
VPS28-215ENST00000531924 RBMY1EA6NEQ0 496 aaKnown RBP11.1□□□□□ -0.63
VPS28-215ENST00000531924 RBMY1DP0C7P1 496 aaKnown RBP11.1□□□□□ -0.63
VPS28-215ENST00000531924 EDN2P20800 178 aa11.1□□□□□ -0.63
VPS28-215ENST00000531924 OR2B8PP59922 312 aa11.1□□□□□ -0.63
VPS28-215ENST00000531924 PLET1Q6UQ28 207 aa11.1□□□□□ -0.63
VPS28-215ENST00000531924 LINC00322Q6ZN03 302 aaPredicted RBP11.1□□□□□ -0.63
VPS28-215ENST00000531924 RBPMS2Q6ZRY4 209 aaKnown RBP11.1□□□□□ -0.63
VPS28-215ENST00000531924 OR5AP2Q8NGF4 316 aa11.1□□□□□ -0.63
VPS28-215ENST00000531924 S100A16Q96FQ6 103 aaKnown RBP11.1□□□□□ -0.63
VPS28-215ENST00000531924 WFDC10AQ9H1F0 79 aa11.1□□□□□ -0.63
VPS28-215ENST00000531924 RNF167Q9H6Y7 350 aa11.1□□□□□ -0.63
VPS28-215ENST00000531924 DMRT1Q9Y5R6 373 aa11.1□□□□□ -0.63
VPS28-215ENST00000531924 SACSQ9NZJ4 4579 aa11.09□□□□□ -0.63
VPS28-215ENST00000531924 IGLV11-55A0A075B6I3 123 aa11.09□□□□□ -0.63
VPS28-215ENST00000531924 TMEM213A2RRL7 107 aa11.09□□□□□ -0.63
VPS28-215ENST00000531924 MEIS3P1A6NDR6 274 aa11.09□□□□□ -0.63
VPS28-215ENST00000531924 UPK2O00526 184 aa11.09□□□□□ -0.63
VPS28-215ENST00000531924 SCAF4O95104 1147 aaKnown RBP11.09□□□□□ -0.63
VPS28-215ENST00000531924 GPR183P32249 361 aa11.09□□□□□ -0.63
VPS28-215ENST00000531924 CROCCP3Q8IVE0 287 aa11.09□□□□□ -0.63
VPS28-215ENST00000531924 TMEM61Q8N0U2 210 aa11.09□□□□□ -0.63
VPS28-215ENST00000531924 TSPAN14Q8NG11 270 aa11.09□□□□□ -0.63
VPS28-215ENST00000531924 GIMAP1Q8WWP7 306 aa11.09□□□□□ -0.63
VPS28-215ENST00000531924 MARC2Q969Z3 335 aa11.09□□□□□ -0.63
VPS28-215ENST00000531924 SRSF8Q9BRL6 282 aaKnown RBP11.09□□□□□ -0.63
VPS28-215ENST00000531924 QTRT1Q9BXR0 403 aaKnown RBP11.09□□□□□ -0.63
VPS28-215ENST00000531924 PLEKHA2Q9HB19 425 aa11.09□□□□□ -0.63
VPS28-215ENST00000531924 TMEM140Q9NV12 185 aa11.09□□□□□ -0.63
VPS28-215ENST00000531924 EHFQ9NZC4 300 aa11.09□□□□□ -0.63
VPS28-215ENST00000531924 UFC1Q9Y3C8 167 aa11.09□□□□□ -0.63
VPS28-215ENST00000531924 MFSD2BA6NFX1 497 aa11.08□□□□□ -0.64
VPS28-215ENST00000531924 A8MWP6 167 aa11.08□□□□□ -0.64
VPS28-215ENST00000531924 TMEM127O75204 238 aa11.08□□□□□ -0.64
VPS28-215ENST00000531924 RPA2P15927 270 aa11.08□□□□□ -0.64
VPS28-215ENST00000531924 ZNF585BQ52M93 769 aa11.08□□□□□ -0.64
VPS28-215ENST00000531924 TM4SF20Q53R12 229 aa11.08□□□□□ -0.64
VPS28-215ENST00000531924 BTNL8Q6UX41 500 aa11.08□□□□□ -0.64
VPS28-215ENST00000531924 ZNF818PQ6ZRF7 136 aa11.08□□□□□ -0.64
VPS28-215ENST00000531924 GGTLC1Q9BX51 225 aa11.08□□□□□ -0.64
VPS28-215ENST00000531924 HINT2Q9BX68 163 aa11.08□□□□□ -0.64
VPS28-215ENST00000531924 MLXQ9UH92 298 aa11.08□□□□□ -0.64
VPS28-215ENST00000531924 TRAV3A0A0B4J244 114 aa11.07□□□□□ -0.64
VPS28-215ENST00000531924 IGHV3-35A0A0C4DH35 117 aa11.07□□□□□ -0.64
VPS28-215ENST00000531924 XRCC3O43542 346 aa11.07□□□□□ -0.64
VPS28-215ENST00000531924 S1PR2O95136 353 aa11.07□□□□□ -0.64
VPS28-215ENST00000531924 TRAPPC2P0DI81 140 aa11.07□□□□□ -0.64
VPS28-215ENST00000531924 TRAPPC2BP0DI82 140 aa11.07□□□□□ -0.64
VPS28-215ENST00000531924 OR13C7P0DN81 318 aa11.07□□□□□ -0.64
VPS28-215ENST00000531924 POU2AF1Q16633 256 aa11.07□□□□□ -0.64
VPS28-215ENST00000531924 TMEM69Q5SWH9 247 aa11.07□□□□□ -0.64
VPS28-215ENST00000531924 THOC7Q6I9Y2 204 aaKnown RBP11.07□□□□□ -0.64
VPS28-215ENST00000531924 SLC25A24Q6NUK1 477 aa11.07□□□□□ -0.64
VPS28-215ENST00000531924 HSD17B13Q7Z5P4 300 aaPredicted RBP11.07□□□□□ -0.64
VPS28-215ENST00000531924 CMTM1Q8IZ96 169 aa11.07□□□□□ -0.64
VPS28-215ENST00000531924 SLC38A6Q8IZM9 456 aa11.07□□□□□ -0.64
VPS28-215ENST00000531924 OR1L6Q8NGR2 347 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms