RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 C9orf106Q8NAJ2 232 aa17.36■□□□□ 0.37
UPF1-207ENST00000599848 ST6GALNAC3Q8NDV1 305 aa17.36■□□□□ 0.37
UPF1-207ENST00000599848 TRBV5-7A0A0A0MS05 114 aa17.36■□□□□ 0.37
UPF1-207ENST00000599848 A0A1W2PRX2 142 aa17.36■□□□□ 0.37
UPF1-207ENST00000599848 SELENOHQ8IZQ5 122 aaKnown RBP17.36■□□□□ 0.37
UPF1-207ENST00000599848 CRPP02741 224 aa17.36■□□□□ 0.37
UPF1-207ENST00000599848 CYP2G1PQ6ZSU1 146 aa17.36■□□□□ 0.37
UPF1-207ENST00000599848 DNAL4O96015 105 aa17.35■□□□□ 0.37
UPF1-207ENST00000599848 SCGB1A1P11684 91 aa17.35■□□□□ 0.37
UPF1-207ENST00000599848 MIC13Q5XKP0 118 aa17.35■□□□□ 0.37
UPF1-207ENST00000599848 FBXL15Q9H469 300 aa17.35■□□□□ 0.37
UPF1-207ENST00000599848 RFPL3SP0C7P2 107 aa17.35■□□□□ 0.37
UPF1-207ENST00000599848 IGHV1-2P23083 117 aa17.35■□□□□ 0.37
UPF1-207ENST00000599848 GZMMP51124 257 aa17.35■□□□□ 0.37
UPF1-207ENST00000599848 PSMG4Q5JS54 123 aa17.35■□□□□ 0.37
UPF1-207ENST00000599848 TMEM183AQ8IXX5 376 aa17.35■□□□□ 0.37
UPF1-207ENST00000599848 H3BQ15 152 aa17.35■□□□□ 0.37
UPF1-207ENST00000599848 C12orf54Q6X4T0 127 aa17.35■□□□□ 0.37
UPF1-207ENST00000599848 GGCTO75223 188 aaKnown RBP17.35■□□□□ 0.37
UPF1-207ENST00000599848 TMEM91Q6ZNR0 172 aa17.35■□□□□ 0.37
UPF1-207ENST00000599848 C3orf56Q8N813 242 aa17.35■□□□□ 0.37
UPF1-207ENST00000599848 CASP8AP2Q9UKL3 1982 aa17.35■□□□□ 0.37
UPF1-207ENST00000599848 LOC389332A0A1B0GUA5 103 aa17.34■□□□□ 0.37
UPF1-207ENST00000599848 C8orf82Q6P1X6 216 aaPredicted RBP17.34■□□□□ 0.37
UPF1-207ENST00000599848 BMPERQ8N8U9 685 aa17.34■□□□□ 0.37
UPF1-207ENST00000599848 SGMS2Q8NHU3 365 aa17.34■□□□□ 0.37
UPF1-207ENST00000599848 IFI27L2Q9H2X8 130 aa17.34■□□□□ 0.37
UPF1-207ENST00000599848 PRR13Q9NZ81 148 aa17.34■□□□□ 0.37
UPF1-207ENST00000599848 KCNE5Q9UJ90 142 aa17.34■□□□□ 0.37
UPF1-207ENST00000599848 MEF2BQ02080 365 aaPredicted RBP17.34■□□□□ 0.37
UPF1-207ENST00000599848 SRSF12Q8WXF0 261 aaKnown RBP17.34■□□□□ 0.37
UPF1-207ENST00000599848 PLAUP00749 431 aa17.34■□□□□ 0.37
UPF1-207ENST00000599848 RPS11P62280 158 aaKnown RBP eCLIP17.34■□□□□ 0.37
UPF1-207ENST00000599848 C10orf111Q8N326 155 aa17.34■□□□□ 0.37
UPF1-207ENST00000599848 NABP2Q9BQ15 211 aa17.34■□□□□ 0.37
UPF1-207ENST00000599848 C1QTNF5Q9BXJ0 243 aa17.34■□□□□ 0.37
UPF1-207ENST00000599848 ZNRF1Q8ND25 227 aa17.34■□□□□ 0.37
UPF1-207ENST00000599848 TP53RKQ96S44 253 aa17.34■□□□□ 0.37
UPF1-207ENST00000599848 SUCLG1P53597 346 aaKnown RBP17.34■□□□□ 0.37
UPF1-207ENST00000599848 TRIP11Q15643 1979 aa17.33■□□□□ 0.37
UPF1-207ENST00000599848 A0A1B0GW15 77 aa17.33■□□□□ 0.37
UPF1-207ENST00000599848 ICE1Q9Y2F5 2266 aa17.33■□□□□ 0.36
UPF1-207ENST00000599848 IGKV3OR2-268A0A0C4DH90 116 aa17.33■□□□□ 0.36
UPF1-207ENST00000599848 FOXI3A8MTJ6 420 aaPredicted RBP17.33■□□□□ 0.36
UPF1-207ENST00000599848 EFNB2P52799 333 aa17.33■□□□□ 0.36
UPF1-207ENST00000599848 LRTM2Q8N967 370 aa17.33■□□□□ 0.36
UPF1-207ENST00000599848 TRAV20A0A0B4J274 112 aa17.33■□□□□ 0.36
UPF1-207ENST00000599848 Q6AWC8 147 aa17.33■□□□□ 0.36
UPF1-207ENST00000599848 ABLIM2Q6H8Q1 611 aa17.33■□□□□ 0.36
UPF1-207ENST00000599848 DRAM1Q8N682 238 aa17.33■□□□□ 0.36
UPF1-207ENST00000599848 MED19A0JLT2 244 aaPredicted RBP17.33■□□□□ 0.36
UPF1-207ENST00000599848 NTN3O00634 580 aaPredicted RBP17.33■□□□□ 0.36
UPF1-207ENST00000599848 HSPB1P04792 205 aaKnown RBP17.33■□□□□ 0.36
UPF1-207ENST00000599848 SPNP16150 400 aa17.33■□□□□ 0.36
UPF1-207ENST00000599848 ASCC3Q8N3C0 2202 aaKnown RBP17.32■□□□□ 0.36
UPF1-207ENST00000599848 CROCCQ5TZA2 2017 aa17.32■□□□□ 0.36
UPF1-207ENST00000599848 RCC1P18754 421 aaPredicted RBP17.32■□□□□ 0.36
UPF1-207ENST00000599848 GPR183P32249 361 aa17.32■□□□□ 0.36
UPF1-207ENST00000599848 PVRIGQ6DKI7 326 aa17.32■□□□□ 0.36
UPF1-207ENST00000599848 OR11H4Q8NGC9 324 aa17.32■□□□□ 0.36
UPF1-207ENST00000599848 FUT9Q9Y231 359 aa17.32■□□□□ 0.36
UPF1-207ENST00000599848 C9JCJ5 164 aa17.32■□□□□ 0.36
UPF1-207ENST00000599848 IGKV3-20P01619 116 aa17.32■□□□□ 0.36
UPF1-207ENST00000599848 AMY1AP04745 511 aa17.32■□□□□ 0.36
UPF1-207ENST00000599848 DPH3P1Q9H4G8 78 aa17.32■□□□□ 0.36
UPF1-207ENST00000599848 TRBV9A0A0B4J1U6 114 aa17.31■□□□□ 0.36
UPF1-207ENST00000599848 TMEM133Q9H2Q1 129 aa17.31■□□□□ 0.36
UPF1-207ENST00000599848 TRGV11A0A075B6L2 103 aa17.31■□□□□ 0.36
UPF1-207ENST00000599848 H3BVH4 76 aa17.31■□□□□ 0.36
UPF1-207ENST00000599848 ZIC3O60481 467 aa17.31■□□□□ 0.36
UPF1-207ENST00000599848 REG1AP05451 166 aa17.31■□□□□ 0.36
UPF1-207ENST00000599848 CELA3AP09093 270 aa17.31■□□□□ 0.36
UPF1-207ENST00000599848 FAM216BQ8N7L0 139 aa17.31■□□□□ 0.36
UPF1-207ENST00000599848 OR10AG1Q8NH19 301 aa17.31■□□□□ 0.36
UPF1-207ENST00000599848 OR13C6PQ8NH95 151 aa17.3■□□□□ 0.36
UPF1-207ENST00000599848 CBY1Q9Y3M2 126 aa17.3■□□□□ 0.36
UPF1-207ENST00000599848 NDUFS8O00217 210 aa17.3■□□□□ 0.36
UPF1-207ENST00000599848 NDUFB4O95168 129 aa17.3■□□□□ 0.36
UPF1-207ENST00000599848 TEX45Q8NA69 505 aa17.3■□□□□ 0.36
UPF1-207ENST00000599848 TRAV34A0A0B4J273 112 aa17.3■□□□□ 0.36
UPF1-207ENST00000599848 CLEC19AQ6UXS0 136 aa17.3■□□□□ 0.36
UPF1-207ENST00000599848 ZNF600Q6ZNG1 722 aa17.3■□□□□ 0.36
UPF1-207ENST00000599848 ERVK11-1P61568 191 aa17.3■□□□□ 0.36
UPF1-207ENST00000599848 PMCHL1Q16048 86 aa17.3■□□□□ 0.36
UPF1-207ENST00000599848 MINOS1Q5TGZ0 78 aa17.3■□□□□ 0.36
UPF1-207ENST00000599848 LEAP2Q969E1 77 aa17.3■□□□□ 0.36
UPF1-207ENST00000599848 RNF166Q96A37 237 aaPredicted RBP17.3■□□□□ 0.36
UPF1-207ENST00000599848 MINOS1-NBL1R4GNA1 71 aa17.3■□□□□ 0.36
UPF1-207ENST00000599848 CABIN1Q9Y6J0 2220 aa17.29■□□□□ 0.36
UPF1-207ENST00000599848 GOLT1AQ6ZVE7 132 aa17.29■□□□□ 0.36
UPF1-207ENST00000599848 NUDT11Q96G61 164 aa17.29■□□□□ 0.36
UPF1-207ENST00000599848 NEU1Q99519 415 aa17.29■□□□□ 0.36
UPF1-207ENST00000599848 IGKV1D-42A0A075B6H8 117 aa17.29■□□□□ 0.36
UPF1-207ENST00000599848 ZNF815PA8K554 130 aa17.29■□□□□ 0.36
UPF1-207ENST00000599848 ZG16O60844 167 aa17.29■□□□□ 0.36
UPF1-207ENST00000599848 SRD5A1P18405 259 aa17.29■□□□□ 0.36
UPF1-207ENST00000599848 MALP21145 153 aa17.29■□□□□ 0.36
UPF1-207ENST00000599848 J3QKU1 62 aa17.29■□□□□ 0.36
UPF1-207ENST00000599848 TDGF1P13385 188 aa17.29■□□□□ 0.36
UPF1-207ENST00000599848 GPX4P36969 197 aaPredicted RBP17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms