RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SLAQ13239 276 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 TNXAQ16473 311 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 TSTD1Q8NFU3 115 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 EAF1Q96JC9 268 aaPredicted RBP11.24□□□□□ -0.61
SKA3-201ENST00000298260 GSX1Q9H4S2 264 aaPredicted RBP11.24□□□□□ -0.61
SKA3-201ENST00000298260 CLEC5AQ9NY25 188 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 WASHC3Q9Y3C0 194 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 PRR14LQ5THK1 2151 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 A0A0G2JMM0 328 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 A0A1W2PPB8 328 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 C15orf62A8K5M9 175 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 KIR3DP1A8MWS1 328 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.24□□□□□ -0.61
SKA3-201ENST00000298260 SAP30O75446 220 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 TMEM11P17152 192 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 PQLC2Q6ZP29 291 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 MRPL21Q7Z2W9 205 aaKnown RBP11.24□□□□□ -0.61
SKA3-201ENST00000298260 VKORC1L1Q8N0U8 176 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 Q8NFD4 153 aa11.24□□□□□ -0.61
SKA3-201ENST00000298260 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 DEFB108AA8MXU0 73 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 GATA2P23769 480 aaPredicted RBP11.23□□□□□ -0.61
SKA3-201ENST00000298260 CD24P25063 80 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 MRPS21P82921 87 aaKnown RBP11.23□□□□□ -0.61
SKA3-201ENST00000298260 MRGPRDQ8TDS7 321 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 BCL2L2Q92843 193 aaPredicted RBP11.23□□□□□ -0.61
SKA3-201ENST00000298260 FAM234AQ9H0X4 552 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 SPTBN2O15020 2390 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 DNAJC13O75165 2243 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 IGHV3-43A0A0B4J1X8 118 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 AHRRA9YTQ3 701 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 C17orf112F2Z3M2 114 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 GOSR1O95249 250 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 CGAP01215 116 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 IGHV3-43DP0DP04 118 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 FOXE3Q13461 319 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 CEACAM21Q3KPI0 293 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 ZNF841Q6ZN19 808 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 KLHDC1Q8N7A1 406 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 OR52L2PQ8NGH6 319 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 FAM168AQ92567 244 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.23□□□□□ -0.61
SKA3-201ENST00000298260 CDC42EP3Q9UKI2 254 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 RPH3ALQ9UNE2 315 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 TECTAO75443 2155 aa11.23□□□□□ -0.61
SKA3-201ENST00000298260 NUDT3O95989 172 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 IGHV3-13P01766 116 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 IGHV3-7P01780 117 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 CRYBB3P26998 211 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 CA7P43166 264 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 RPL19P84098 196 aaKnown RBP11.22□□□□□ -0.61
SKA3-201ENST00000298260 CENPWQ5EE01 88 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 SSBP4Q9BWG4 385 aaPredicted RBP11.22□□□□□ -0.61
SKA3-201ENST00000298260 PROK2Q9HC23 129 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 CLCF1Q9UBD9 225 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 DMXL1Q9Y485 3027 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 NCKAP5O14513 1909 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 MUC21A0A0G2JKD1 596 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 IGHV1-69-2A0A0G2JMI3 117 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 MUC21A0A140T8X8 626 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 hDV102S1A0JD36 115 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 VAMP5O95183 116 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 PPBPP02775 128 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 MORN2Q502X0 79 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 MUC21Q5SSG8 566 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 PLXDC1Q8IUK5 500 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 GCNT2Q8N0V5 402 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 TPRX1Q8N7U7 411 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 ZNF439Q8NDP4 499 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 MGST2Q99735 147 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 CSTL1Q9H114 145 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 MS4A5Q9H3V2 200 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 TECRQ9NZ01 308 aaKnown RBP11.22□□□□□ -0.61
SKA3-201ENST00000298260 MRPS16Q9Y3D3 137 aaKnown RBP11.22□□□□□ -0.61
SKA3-201ENST00000298260 HCFC1P51610 2035 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 FAM90A10PA6NDY2 464 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 FAM90A18PA6NE21 464 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 FAM90A16PA6NEW6 464 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 FAM90A20PA6NIJ5 464 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 FAM90A8PA6NJQ4 464 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 FAM90A7PA6NKC0 464 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 FAM90A22PA8MWA6 464 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 FAM90A12PA8MX19 464 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 FAM90A5PA8MXJ8 464 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 FAM90A23PA8MXZ1 464 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 TMEM238C9JI98 176 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 TAX1BP3O14907 124 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 MMP23AO75900 390 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 FAM90A15PP0C7V4 464 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 FAM90A13PP0C7W8 464 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 FAM90A14PP0C7W9 464 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 FAM90A24PP0C7X0 464 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 MGST1P10620 155 aaKnown RBP11.22□□□□□ -0.61
SKA3-201ENST00000298260 SRSF7Q16629 238 aaKnown RBP eCLIP11.22□□□□□ -0.61
SKA3-201ENST00000298260 LTC4SQ16873 150 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 KRTAP27-1Q3LI81 207 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 PDLIM3Q53GG5 364 aaPredicted RBP11.22□□□□□ -0.61
SKA3-201ENST00000298260 RIPPLY2Q5TAB7 128 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 TREML4Q6UXN2 200 aa11.22□□□□□ -0.61
SKA3-201ENST00000298260 LINC00173Q6ZV60 143 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 129.9 ms