RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 TMEM213A2RRL7 107 aa12.76□□□□□ -0.37
VIM-204ENST00000478746 TRDCB7Z8K6 153 aa12.76□□□□□ -0.37
VIM-204ENST00000478746 SRMP19623 302 aa12.76□□□□□ -0.37
VIM-204ENST00000478746 TPBGQ13641 420 aa12.76□□□□□ -0.37
VIM-204ENST00000478746 RBPMS2Q6ZRY4 209 aaKnown RBP12.76□□□□□ -0.37
VIM-204ENST00000478746 RNF183Q96D59 192 aa12.76□□□□□ -0.37
VIM-204ENST00000478746 FBXL7Q9UJT9 491 aa12.76□□□□□ -0.37
VIM-204ENST00000478746 TPRKBQ9Y3C4 175 aa12.76□□□□□ -0.37
VIM-204ENST00000478746 TRAV25A0A0B4J276 109 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 TMEM14DPA8MWL7 114 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 MYL12BO14950 172 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 IGHV3-23P01764 117 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 ARL3P36405 182 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 SERPINB10P48595 397 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 WNT4P56705 351 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 QRFPP83859 136 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 INSL4Q14641 139 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 ACSM3Q53FZ2 586 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 RBM48Q5RL73 367 aaKnown RBP12.75□□□□□ -0.37
VIM-204ENST00000478746 OR4A47Q6IF82 309 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 BTNL8Q6UX41 500 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 CLEC19AQ6UXS0 136 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 SLC38A6Q8IZM9 456 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 STPG3Q8N7X2 389 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 OR1L6Q8NGR2 347 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 ZNF430Q9H8G1 570 aaPredicted RBP12.75□□□□□ -0.37
VIM-204ENST00000478746 C12orf4Q9NQ89 552 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 PSORS1C1Q9UIG5 152 aa12.75□□□□□ -0.37
VIM-204ENST00000478746 CRYZL1O95825 349 aa12.74□□□□□ -0.37
VIM-204ENST00000478746 PRR20EP86478 221 aa12.74□□□□□ -0.37
VIM-204ENST00000478746 PRR20CP86479 221 aa12.74□□□□□ -0.37
VIM-204ENST00000478746 PRR20DP86480 221 aa12.74□□□□□ -0.37
VIM-204ENST00000478746 PRR20BP86481 221 aa12.74□□□□□ -0.37
VIM-204ENST00000478746 PRR20AP86496 221 aa12.74□□□□□ -0.37
VIM-204ENST00000478746 AHSA2Q719I0 299 aa12.74□□□□□ -0.37
VIM-204ENST00000478746 LRRTM1Q86UE6 522 aa12.74□□□□□ -0.37
VIM-204ENST00000478746 OR2C3Q8N628 320 aa12.74□□□□□ -0.37
VIM-204ENST00000478746 PHYHIPQ92561 330 aa12.74□□□□□ -0.37
VIM-204ENST00000478746 CMSS1Q9BQ75 279 aaKnown RBP12.74□□□□□ -0.37
VIM-204ENST00000478746 URM1Q9BTM9 101 aaKnown RBP12.74□□□□□ -0.37
VIM-204ENST00000478746 LPAR5Q9H1C0 372 aa12.74□□□□□ -0.37
VIM-204ENST00000478746 BLOC1S6Q9UL45 172 aa12.74□□□□□ -0.37
VIM-204ENST00000478746 HSF4Q9ULV5 492 aa12.74□□□□□ -0.37
VIM-204ENST00000478746 KIR2DL5BA0A0G2JN68 375 aa12.73□□□□□ -0.37
VIM-204ENST00000478746 KIR2DL5BA0A0G2JPC4 375 aa12.73□□□□□ -0.37
VIM-204ENST00000478746 A8MWP6 167 aa12.73□□□□□ -0.37
VIM-204ENST00000478746 PTGES3LE9PB15 166 aa12.73□□□□□ -0.37
VIM-204ENST00000478746 BET1O15155 118 aa12.73□□□□□ -0.37
VIM-204ENST00000478746 CREBL2O60519 120 aaPredicted RBP12.73□□□□□ -0.37
VIM-204ENST00000478746 BPNT1O95861 308 aa12.73□□□□□ -0.37
VIM-204ENST00000478746 CD3GP09693 182 aa12.73□□□□□ -0.37
VIM-204ENST00000478746 MMD2Q8IY49 270 aa12.73□□□□□ -0.37
VIM-204ENST00000478746 KIR2DL5AQ8N109 375 aa12.73□□□□□ -0.37
VIM-204ENST00000478746 FAM89BQ8N5H3 189 aa12.73□□□□□ -0.37
VIM-204ENST00000478746 MS4A15Q8N5U1 240 aa12.73□□□□□ -0.37
VIM-204ENST00000478746 OR4A4PQ8NGN8 299 aa12.73□□□□□ -0.37
VIM-204ENST00000478746 KIR2DL5BQ8NHK3 375 aa12.73□□□□□ -0.37
VIM-204ENST00000478746 OSR1Q8TAX0 266 aaPredicted RBP12.73□□□□□ -0.37
VIM-204ENST00000478746 C5orf30Q96GV9 206 aa12.73□□□□□ -0.37
VIM-204ENST00000478746 ADTRPQ96IZ2 230 aa12.73□□□□□ -0.37
VIM-204ENST00000478746 ZNF257Q9Y2Q1 563 aa12.73□□□□□ -0.37
VIM-204ENST00000478746 RBM7Q9Y580 266 aaKnown RBP12.73□□□□□ -0.37
VIM-204ENST00000478746 HMX3A6NHT5 357 aa12.72□□□□□ -0.37
VIM-204ENST00000478746 IFNA4P05014 189 aa12.72□□□□□ -0.37
VIM-204ENST00000478746 TMEM50BP56557 158 aa12.72□□□□□ -0.37
VIM-204ENST00000478746 CDK10Q15131 360 aa12.72□□□□□ -0.37
VIM-204ENST00000478746 ZNF585BQ52M93 769 aa12.72□□□□□ -0.37
VIM-204ENST00000478746 C10orf55Q5SWW7 151 aa12.72□□□□□ -0.37
VIM-204ENST00000478746 NANOGP1Q8N7R0 232 aa12.72□□□□□ -0.37
VIM-204ENST00000478746 OR10J5Q8NHC4 309 aa12.72□□□□□ -0.37
VIM-204ENST00000478746 MARC2Q969Z3 335 aa12.72□□□□□ -0.37
VIM-204ENST00000478746 CCDC140Q96MF4 163 aa12.72□□□□□ -0.37
VIM-204ENST00000478746 FKBP14Q9NWM8 211 aa12.72□□□□□ -0.37
VIM-204ENST00000478746 UBQLN2Q9UHD9 624 aa12.72□□□□□ -0.37
VIM-204ENST00000478746 S4R3C0 116 aa12.72□□□□□ -0.37
VIM-204ENST00000478746 DNAH6Q9C0G6 4158 aa12.72□□□□□ -0.37
VIM-204ENST00000478746 DPPA5A6NC42 116 aa12.71□□□□□ -0.37
VIM-204ENST00000478746 FABP7O15540 132 aa12.71□□□□□ -0.37
VIM-204ENST00000478746 SAA1P0DJI8 122 aaPredicted RBP12.71□□□□□ -0.37
VIM-204ENST00000478746 C8orf88P0DMB2 117 aa12.71□□□□□ -0.37
VIM-204ENST00000478746 CRHBPP24387 322 aa12.71□□□□□ -0.37
VIM-204ENST00000478746 HSD17B12Q53GQ0 312 aa12.71□□□□□ -0.37
VIM-204ENST00000478746 IGSF11Q5DX21 431 aa12.71□□□□□ -0.37
VIM-204ENST00000478746 CEACAM19Q7Z692 300 aa12.71□□□□□ -0.37
VIM-204ENST00000478746 OR6M1Q8NGM8 313 aa12.71□□□□□ -0.37
VIM-204ENST00000478746 EEF1AKMT3Q96AZ1 226 aa12.71□□□□□ -0.37
VIM-204ENST00000478746 ARHGAP5-AS1Q96IT6 56 aa12.71□□□□□ -0.37
VIM-204ENST00000478746 DCUN1D5Q9BTE7 237 aa12.71□□□□□ -0.37
VIM-204ENST00000478746 PECRQ9BY49 303 aa12.71□□□□□ -0.37
VIM-204ENST00000478746 YTHDF1Q9BYJ9 559 aaKnown RBP12.71□□□□□ -0.37
VIM-204ENST00000478746 LINC00473A8K010 186 aa12.7□□□□□ -0.38
VIM-204ENST00000478746 RGS10O43665 173 aa12.7□□□□□ -0.38
VIM-204ENST00000478746 CDK1P06493 297 aa12.7□□□□□ -0.38
VIM-204ENST00000478746 CD37P11049 281 aa12.7□□□□□ -0.38
VIM-204ENST00000478746 RPL35AP18077 110 aaKnown RBP12.7□□□□□ -0.38
VIM-204ENST00000478746 DUTP33316 252 aaKnown RBP12.7□□□□□ -0.38
VIM-204ENST00000478746 C19orf35Q6ZS72 473 aa12.7□□□□□ -0.38
VIM-204ENST00000478746 SPAG8Q99932 426 aaPredicted RBP12.7□□□□□ -0.38
VIM-204ENST00000478746 DUSP21Q9H596 190 aa12.7□□□□□ -0.38
VIM-204ENST00000478746 MRPL27Q9P0M9 148 aaKnown RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms