RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 MKI67P46013 3256 aaKnown RBP12.6□□□□□ -0.39
RFFL-208ENST00000581039 IL16Q14005 1332 aa12.6□□□□□ -0.39
RFFL-208ENST00000581039 HTTP42858 3142 aa12.59□□□□□ -0.39
RFFL-208ENST00000581039 VAMP4O75379 141 aa12.59□□□□□ -0.39
RFFL-208ENST00000581039 MYCP01106 439 aaPredicted RBP12.59□□□□□ -0.39
RFFL-208ENST00000581039 CRKP46108 304 aa12.59□□□□□ -0.39
RFFL-208ENST00000581039 GYG1P46976 350 aa12.59□□□□□ -0.39
RFFL-208ENST00000581039 UBE4AQ14139 1066 aa12.59□□□□□ -0.39
RFFL-208ENST00000581039 BEND3Q5T5X7 828 aa12.59□□□□□ -0.39
RFFL-208ENST00000581039 FAM43AQ8N2R8 423 aa12.59□□□□□ -0.39
RFFL-208ENST00000581039 OTUD5Q96G74 571 aa12.59□□□□□ -0.39
RFFL-208ENST00000581039 TMEM39BQ9GZU3 492 aa12.59□□□□□ -0.39
RFFL-208ENST00000581039 COLQQ9Y215 455 aaPredicted RBP12.59□□□□□ -0.39
RFFL-208ENST00000581039 F6X3S4 739 aa12.58□□□□□ -0.4
RFFL-208ENST00000581039 CETPP11597 493 aa12.58□□□□□ -0.4
RFFL-208ENST00000581039 EPHA10Q5JZY3 1008 aa12.58□□□□□ -0.4
RFFL-208ENST00000581039 VPS37DQ86XT2 251 aa12.58□□□□□ -0.4
RFFL-208ENST00000581039 CDAN1Q8IWY9 1227 aa12.58□□□□□ -0.4
RFFL-208ENST00000581039 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.58□□□□□ -0.4
RFFL-208ENST00000581039 FAM84BQ96KN1 310 aaPredicted RBP12.58□□□□□ -0.4
RFFL-208ENST00000581039 C9orf78Q9NZ63 289 aaPredicted RBP12.58□□□□□ -0.4
RFFL-208ENST00000581039 CENPFP49454 3210 aa12.57□□□□□ -0.4
RFFL-208ENST00000581039 GRM8O00222 908 aa12.57□□□□□ -0.4
RFFL-208ENST00000581039 TLR2O60603 784 aa12.57□□□□□ -0.4
RFFL-208ENST00000581039 GNRH1P01148 92 aa12.57□□□□□ -0.4
RFFL-208ENST00000581039 ECM29Q5VYK3 1845 aa12.56□□□□□ -0.4
RFFL-208ENST00000581039 SPDYE5A6NIY4 337 aa12.56□□□□□ -0.4
RFFL-208ENST00000581039 H0YGN5 161 aa12.56□□□□□ -0.4
RFFL-208ENST00000581039 FRAT2O75474 233 aaPredicted RBP12.56□□□□□ -0.4
RFFL-208ENST00000581039 LACTBP83111 547 aaPredicted RBP12.56□□□□□ -0.4
RFFL-208ENST00000581039 ERO1BQ86YB8 467 aa12.56□□□□□ -0.4
RFFL-208ENST00000581039 SH3TC2Q8TF17 1288 aa12.56□□□□□ -0.4
RFFL-208ENST00000581039 HOOK2Q96ED9 719 aa12.56□□□□□ -0.4
RFFL-208ENST00000581039 ZCCHC17Q9NP64 241 aaKnown RBP12.56□□□□□ -0.4
RFFL-208ENST00000581039 FANCIQ9NVI1 1328 aa12.56□□□□□ -0.4
RFFL-208ENST00000581039 BTBD19C9JJ37 291 aa12.55□□□□□ -0.4
RFFL-208ENST00000581039 PRMT2P55345 433 aa12.55□□□□□ -0.4
RFFL-208ENST00000581039 HDLBPQ00341 1268 aaKnown RBP12.55□□□□□ -0.4
RFFL-208ENST00000581039 EXOSC9Q06265 439 aaKnown RBP12.55□□□□□ -0.4
RFFL-208ENST00000581039 CHAF1AQ13111 956 aaPredicted RBP12.55□□□□□ -0.4
RFFL-208ENST00000581039 SNAPC2Q13487 334 aa12.55□□□□□ -0.4
RFFL-208ENST00000581039 NCBP3Q53F19 620 aaKnown RBP12.55□□□□□ -0.4
RFFL-208ENST00000581039 CAVIN4Q5BKX8 364 aa12.55□□□□□ -0.4
RFFL-208ENST00000581039 TBC1D22AQ8WUA7 517 aa12.55□□□□□ -0.4
RFFL-208ENST00000581039 TEKT1Q969V4 418 aa12.55□□□□□ -0.4
RFFL-208ENST00000581039 WRNIP1Q96S55 665 aa12.55□□□□□ -0.4
RFFL-208ENST00000581039 PUS3Q9BZE2 481 aaKnown RBP12.55□□□□□ -0.4
RFFL-208ENST00000581039 ARHGAP39Q9C0H5 1083 aa12.55□□□□□ -0.4
RFFL-208ENST00000581039 TMOD2Q9NZR1 351 aa12.55□□□□□ -0.4
RFFL-208ENST00000581039 RBBP6Q7Z6E9 1792 aaKnown RBP12.55□□□□□ -0.4
RFFL-208ENST00000581039 MROH5Q6ZUA9 1318 aa12.55□□□□□ -0.4
RFFL-208ENST00000581039 LAMB1P07942 1786 aa12.54□□□□□ -0.4
RFFL-208ENST00000581039 IRF6O14896 467 aa12.54□□□□□ -0.4
RFFL-208ENST00000581039 ALDH1L1O75891 902 aa12.54□□□□□ -0.4
RFFL-208ENST00000581039 CACNB3P54284 484 aa12.54□□□□□ -0.4
RFFL-208ENST00000581039 SLC4A10Q6U841 1118 aa12.54□□□□□ -0.4
RFFL-208ENST00000581039 FBXO33Q7Z6M2 555 aa12.54□□□□□ -0.4
RFFL-208ENST00000581039 WDR63Q8IWG1 891 aa12.54□□□□□ -0.4
RFFL-208ENST00000581039 DPF3Q92784 378 aa12.54□□□□□ -0.4
RFFL-208ENST00000581039 ZKSCAN4Q969J2 545 aaPredicted RBP12.54□□□□□ -0.4
RFFL-208ENST00000581039 MRIQ9BWK5 157 aa12.54□□□□□ -0.4
RFFL-208ENST00000581039 IQSEC3Q9UPP2 1182 aaPredicted RBP12.54□□□□□ -0.4
RFFL-208ENST00000581039 SNCAIPQ9Y6H5 919 aa12.54□□□□□ -0.4
RFFL-208ENST00000581039 BRCA2P51587 3418 aa12.53□□□□□ -0.4
RFFL-208ENST00000581039 ECM2O94769 699 aaPredicted RBP12.53□□□□□ -0.4
RFFL-208ENST00000581039 HOXD10P28358 340 aa12.53□□□□□ -0.4
RFFL-208ENST00000581039 PPIL2Q13356 520 aa12.53□□□□□ -0.4
RFFL-208ENST00000581039 GRIK5Q16478 980 aa12.53□□□□□ -0.4
RFFL-208ENST00000581039 CCDC184Q52MB2 194 aa12.53□□□□□ -0.4
RFFL-208ENST00000581039 DCAF15Q66K64 600 aa12.53□□□□□ -0.4
RFFL-208ENST00000581039 FAM83AQ86UY5 434 aa12.53□□□□□ -0.4
RFFL-208ENST00000581039 SRCIN1Q9C0H9 1055 aa12.53□□□□□ -0.4
RFFL-208ENST00000581039 SALL2Q9Y467 1007 aaPredicted RBP12.53□□□□□ -0.4
RFFL-208ENST00000581039 RIPOR2Q9Y4F9 1068 aa12.53□□□□□ -0.4
RFFL-208ENST00000581039 PSMC4P43686 418 aa12.52□□□□□ -0.41
RFFL-208ENST00000581039 PPATQ06203 517 aa12.52□□□□□ -0.41
RFFL-208ENST00000581039 FKBP1CQ5VVH2 108 aa12.52□□□□□ -0.41
RFFL-208ENST00000581039 CHRDL2Q6WN34 429 aa12.52□□□□□ -0.41
RFFL-208ENST00000581039 NKX2-3Q8TAU0 364 aa12.52□□□□□ -0.41
RFFL-208ENST00000581039 ZDHHC15Q96MV8 337 aa12.52□□□□□ -0.41
RFFL-208ENST00000581039 CEP290O15078 2479 aa12.52□□□□□ -0.41
RFFL-208ENST00000581039 FMNL1O95466 1100 aaPredicted RBP12.51□□□□□ -0.41
RFFL-208ENST00000581039 METTL24Q5JXM2 366 aa12.51□□□□□ -0.41
RFFL-208ENST00000581039 APOBEC3HQ6NTF7 200 aaKnown RBP12.51□□□□□ -0.41
RFFL-208ENST00000581039 C17orf99Q6UX52 265 aa12.51□□□□□ -0.41
RFFL-208ENST00000581039 MIGA2Q7L4E1 593 aa12.51□□□□□ -0.41
RFFL-208ENST00000581039 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.51□□□□□ -0.41
RFFL-208ENST00000581039 RAET1EQ8TD07 263 aa12.51□□□□□ -0.41
RFFL-208ENST00000581039 SUCLG2Q96I99 432 aa12.51□□□□□ -0.41
RFFL-208ENST00000581039 ZNF341Q9BYN7 854 aa12.51□□□□□ -0.41
RFFL-208ENST00000581039 SRRDQ9UH36 339 aa12.51□□□□□ -0.41
RFFL-208ENST00000581039 CPA4Q9UI42 421 aa12.51□□□□□ -0.41
RFFL-208ENST00000581039 SUGT1Q9Y2Z0 365 aa12.51□□□□□ -0.41
RFFL-208ENST00000581039 MAST3O60307 1309 aa12.51□□□□□ -0.41
RFFL-208ENST00000581039 OTOFQ9HC10 1997 aa12.5□□□□□ -0.41
RFFL-208ENST00000581039 PDHXO00330 501 aa12.5□□□□□ -0.41
RFFL-208ENST00000581039 NBPF7P0C2Y1 421 aaPredicted RBP12.5□□□□□ -0.41
RFFL-208ENST00000581039 BCAMP50895 628 aa12.5□□□□□ -0.41
RFFL-208ENST00000581039 MTFR1Q15390 333 aa12.5□□□□□ -0.41
RFFL-208ENST00000581039 HHIPL2Q6UWX4 724 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms