RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 RAB11FIP4Q86YS3 637 aa21.08■□□□□ 0.97
VIM-209ENST00000544301 NKX2-3Q8TAU0 364 aa21.08■□□□□ 0.97
VIM-209ENST00000544301 CBX8Q9HC52 389 aa21.08■□□□□ 0.97
VIM-209ENST00000544301 RASGRF1Q13972 1273 aa21.08■□□□□ 0.96
VIM-209ENST00000544301 CYB5R4Q7L1T6 521 aa21.08■□□□□ 0.96
VIM-209ENST00000544301 C8orf76Q96K31 380 aa21.08■□□□□ 0.96
VIM-209ENST00000544301 GOLPH3LQ9H4A5 285 aa21.08■□□□□ 0.96
VIM-209ENST00000544301 ORC3Q9UBD5 711 aaPredicted RBP21.08■□□□□ 0.96
VIM-209ENST00000544301 OTUD7BQ6GQQ9 843 aa21.07■□□□□ 0.96
VIM-209ENST00000544301 AIDAQ96BJ3 306 aa21.07■□□□□ 0.96
VIM-209ENST00000544301 PHLPP1O60346 1717 aa21.07■□□□□ 0.96
VIM-209ENST00000544301 CPLX1O14810 134 aa21.07■□□□□ 0.96
VIM-209ENST00000544301 ALX1Q15699 326 aa21.07■□□□□ 0.96
VIM-209ENST00000544301 CCDC152Q4G0S7 254 aa21.07■□□□□ 0.96
VIM-209ENST00000544301 TTC12Q9H892 705 aaPredicted RBP21.07■□□□□ 0.96
VIM-209ENST00000544301 ANGEL1Q9UNK9 670 aaKnown RBP21.07■□□□□ 0.96
VIM-209ENST00000544301 NTSR2O95665 410 aa21.06■□□□□ 0.96
VIM-209ENST00000544301 TPM2P07951 284 aa21.06■□□□□ 0.96
VIM-209ENST00000544301 FBXO18Q8NFZ0 1043 aa21.06■□□□□ 0.96
VIM-209ENST00000544301 RTEL1Q9NZ71 1219 aa21.06■□□□□ 0.96
VIM-209ENST00000544301 MYH14Q7Z406 1995 aaKnown RBP21.06■□□□□ 0.96
VIM-209ENST00000544301 SH2B2O14492 632 aaPredicted RBP21.05■□□□□ 0.96
VIM-209ENST00000544301 MAP3K12Q12852 859 aa21.05■□□□□ 0.96
VIM-209ENST00000544301 SNW1Q13573 536 aaKnown RBP21.05■□□□□ 0.96
VIM-209ENST00000544301 MAGEB6Q8N7X4 407 aa21.05■□□□□ 0.96
VIM-209ENST00000544301 NIP7Q9Y221 180 aaKnown RBP eCLIP21.05■□□□□ 0.96
VIM-209ENST00000544301 RTL9Q8NET4 1388 aa21.05■□□□□ 0.96
VIM-209ENST00000544301 C4AP0C0L4 1744 aa21.05■□□□□ 0.96
VIM-209ENST00000544301 C4BP0C0L5 1744 aa21.05■□□□□ 0.96
VIM-209ENST00000544301 SPATA31A5Q5VU36 1347 aa21.05■□□□□ 0.96
VIM-209ENST00000544301 SPATA31A7Q8IWB4 1347 aa21.05■□□□□ 0.96
VIM-209ENST00000544301 ME1P48163 572 aa21.05■□□□□ 0.96
VIM-209ENST00000544301 TERF1P54274 439 aa21.05■□□□□ 0.96
VIM-209ENST00000544301 CCDC73Q6ZRK6 1079 aa21.05■□□□□ 0.96
VIM-209ENST00000544301 ENGASEQ8NFI3 743 aa21.05■□□□□ 0.96
VIM-209ENST00000544301 DOCK2Q92608 1830 aa21.05■□□□□ 0.96
VIM-209ENST00000544301 ZMYM6O95789 1325 aa21.04■□□□□ 0.96
VIM-209ENST00000544301 CICQ96RK0 1608 aaPredicted RBP21.04■□□□□ 0.96
VIM-209ENST00000544301 PATL2C9JE40 543 aaKnown RBP21.04■□□□□ 0.96
VIM-209ENST00000544301 CTAGE5O15320 804 aa21.04■□□□□ 0.96
VIM-209ENST00000544301 R3HCC1Q9Y3T6 440 aaKnown RBP21.04■□□□□ 0.96
VIM-209ENST00000544301 B4E1Z4 1266 aa21.04■□□□□ 0.96
VIM-209ENST00000544301 IGHMBP2P38935 993 aaKnown RBP21.04■□□□□ 0.96
VIM-209ENST00000544301 DNAJC25Q9H1X3 360 aa21.04■□□□□ 0.96
VIM-209ENST00000544301 EPB41L4AQ9HCS5 686 aaPredicted RBP21.04■□□□□ 0.96
VIM-209ENST00000544301 NEDD4P46934 1319 aa21.03■□□□□ 0.96
VIM-209ENST00000544301 MBD4O95243 580 aa21.03■□□□□ 0.96
VIM-209ENST00000544301 FAM160A1Q05DH4 1040 aa21.03■□□□□ 0.96
VIM-209ENST00000544301 IFNL3Q8IZI9 196 aa21.03■□□□□ 0.96
VIM-209ENST00000544301 TDRD7Q8NHU6 1098 aaKnown RBP21.03■□□□□ 0.96
VIM-209ENST00000544301 PIBF1Q8WXW3 757 aa21.03■□□□□ 0.96
VIM-209ENST00000544301 PCDHA7Q9UN72 937 aa21.03■□□□□ 0.96
VIM-209ENST00000544301 ZNF165P49910 485 aa21.02■□□□□ 0.96
VIM-209ENST00000544301 BCAMP50895 628 aa21.02■□□□□ 0.96
VIM-209ENST00000544301 FSIP1Q8NA03 581 aa21.02■□□□□ 0.96
VIM-209ENST00000544301 TMEM87BQ96K49 555 aa21.02■□□□□ 0.96
VIM-209ENST00000544301 GJB4Q9NTQ9 266 aa21.02■□□□□ 0.96
VIM-209ENST00000544301 LAMB2P55268 1798 aa21.02■□□□□ 0.96
VIM-209ENST00000544301 CAVIN2O95810 425 aa21.02■□□□□ 0.96
VIM-209ENST00000544301 POLR3DP05423 398 aaPredicted RBP21.02■□□□□ 0.96
VIM-209ENST00000544301 METAP2P50579 478 aaKnown RBP eCLIP21.02■□□□□ 0.964e-12■■■□□ 16.4
VIM-209ENST00000544301 BRAPQ7Z569 592 aa21.02■□□□□ 0.96
VIM-209ENST00000544301 LINC00301Q8NCQ3 95 aa21.02■□□□□ 0.96
VIM-209ENST00000544301 IGDCC4Q8TDY8 1250 aa21.02■□□□□ 0.96
VIM-209ENST00000544301 ARMT1Q9H993 441 aa21.02■□□□□ 0.96
VIM-209ENST00000544301 APOA5Q6Q788 366 aa21.01■□□□□ 0.95
VIM-209ENST00000544301 SPC24Q8NBT2 197 aa21.01■□□□□ 0.95
VIM-209ENST00000544301 RGS22Q8NE09 1264 aa21.01■□□□□ 0.95
VIM-209ENST00000544301 SENP2Q9HC62 589 aa21.01■□□□□ 0.95
VIM-209ENST00000544301 INCENPQ9NQS7 918 aa21.01■□□□□ 0.95
VIM-209ENST00000544301 CLIC4Q9Y696 253 aa21.01■□□□□ 0.95
VIM-209ENST00000544301 KINO60870 393 aaKnown RBP21.01■□□□□ 0.95
VIM-209ENST00000544301 TPM3P06753 285 aa21.01■□□□□ 0.95
VIM-209ENST00000544301 MYSM1Q5VVJ2 828 aa21.01■□□□□ 0.95
VIM-209ENST00000544301 ADALQ6DHV7 355 aa21.01■□□□□ 0.95
VIM-209ENST00000544301 BARGINQ6ZT62 677 aa21.01■□□□□ 0.95
VIM-209ENST00000544301 NAPBQ9H115 298 aa21.01■□□□□ 0.95
VIM-209ENST00000544301 KIF28PB7ZC32 967 aa21■□□□□ 0.95
VIM-209ENST00000544301 KIF23Q02241 960 aaPredicted RBP21■□□□□ 0.95
VIM-209ENST00000544301 CHRNDQ07001 517 aa21■□□□□ 0.95
VIM-209ENST00000544301 SMARCC1Q92922 1105 aaPredicted RBP21■□□□□ 0.95
VIM-209ENST00000544301 LY9Q9HBG7 655 aa21■□□□□ 0.95
VIM-209ENST00000544301 POLR3EQ9NVU0 708 aa21■□□□□ 0.95
VIM-209ENST00000544301 A0A1W2PQ27 194 aa20.99■□□□□ 0.95
VIM-209ENST00000544301 A0A1W2PQ64 194 aa20.99■□□□□ 0.95
VIM-209ENST00000544301 A0A1W2PQD8 194 aa20.99■□□□□ 0.95
VIM-209ENST00000544301 NUTM2BA6NNL0 878 aaPredicted RBP20.99■□□□□ 0.95
VIM-209ENST00000544301 GSG1L2A8MUP6 293 aa20.99■□□□□ 0.95
VIM-209ENST00000544301 GOLGA6L6A8MZA4 724 aa20.99■□□□□ 0.95
VIM-209ENST00000544301 NUTM2EB1AL46 878 aaPredicted RBP20.99■□□□□ 0.95
VIM-209ENST00000544301 KCNQ2O43526 872 aa20.99■□□□□ 0.95
VIM-209ENST00000544301 YEATS4O95619 227 aa20.99■□□□□ 0.95
VIM-209ENST00000544301 CTDSPL2Q05D32 466 aa20.99■□□□□ 0.95
VIM-209ENST00000544301 NUTM2AQ8IVF1 878 aaPredicted RBP20.99■□□□□ 0.95
VIM-209ENST00000544301 MRPS27Q92552 414 aaKnown RBP20.99■□□□□ 0.95
VIM-209ENST00000544301 CDKL5O76039 1030 aa20.99■□□□□ 0.95
VIM-209ENST00000544301 RXRAP19793 462 aa20.99■□□□□ 0.95
VIM-209ENST00000544301 CDC27P30260 824 aa20.99■□□□□ 0.95
VIM-209ENST00000544301 NOLC1Q14978 699 aaKnown RBP eCLIP20.99■□□□□ 0.95
VIM-209ENST00000544301 STK38Q15208 465 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms