RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 ARHGAP5-AS1Q96IT6 56 aa5.26□□□□□ -1.57
SCN1A-212ENST00000636194 CXorf36Q9H7Y0 433 aa5.26□□□□□ -1.57
SCN1A-212ENST00000636194 EDIL3O43854 480 aa5.26□□□□□ -1.57
SCN1A-212ENST00000636194 ZNF385CQ66K41 422 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-212ENST00000636194 PQLC2Q6ZP29 291 aa5.26□□□□□ -1.57
SCN1A-212ENST00000636194 DERL1Q9BUN8 251 aa5.26□□□□□ -1.57
SCN1A-212ENST00000636194 SLC6A13Q9NSD5 602 aa5.26□□□□□ -1.57
SCN1A-212ENST00000636194 TGFAP01135 160 aa5.26□□□□□ -1.57
SCN1A-212ENST00000636194 RPS11P62280 158 aaKnown RBP eCLIP5.26□□□□□ -1.57
SCN1A-212ENST00000636194 CDK5R1Q15078 307 aa5.26□□□□□ -1.57
SCN1A-212ENST00000636194 TMEM52BQ4KMG9 183 aa5.26□□□□□ -1.57
SCN1A-212ENST00000636194 CYB5R2Q6BCY4 276 aa5.26□□□□□ -1.57
SCN1A-212ENST00000636194 LINC01587Q99440 93 aa5.26□□□□□ -1.57
SCN1A-212ENST00000636194 PRADC1Q9BSG0 188 aa5.26□□□□□ -1.57
SCN1A-212ENST00000636194 OPN3Q9H1Y3 402 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-212ENST00000636194 TREX1Q9NSU2 369 aa5.26□□□□□ -1.57
SCN1A-212ENST00000636194 FOXD3Q9UJU5 478 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-212ENST00000636194 RALGAPA2Q2PPJ7 1873 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 ITGB1BP1O14713 200 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 RRHO14718 337 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 NDUFB6O95139 128 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 CLPSP04118 112 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 EFNB1P98172 346 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 ASPHD2Q6ICH7 369 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 THAP10Q9P2Z0 257 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-212ENST00000636194 ZNF236Q9UL36 1845 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 SYNGR3O43761 229 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 EPPINO95925 133 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 SRSF1Q07955 248 aaKnown RBP eCLIP5.25□□□□□ -1.57
SCN1A-212ENST00000636194 THSD4Q6ZMP0 1018 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 GOLT1AQ6ZVE7 132 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 HAPLN2Q9GZV7 340 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 MED29Q9NX70 200 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 PCDH15Q96QU1 1955 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 A0A087WX48 190 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 MPLP40238 635 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 ZFP36L2P47974 494 aaKnown RBP5.25□□□□□ -1.57
SCN1A-212ENST00000636194 PCP4P48539 62 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 TBR1Q16650 682 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 CLLU1OSQ5K130 101 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 ACER2Q5QJU3 275 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 SLC23A3Q6PIS1 610 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 UNQ5815/PRO19632Q6UWF5 114 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 CLEC18BQ6UXF7 455 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 GLCCI1Q86VQ1 547 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 C1orf210Q8IVY1 113 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 PXMP4Q9Y6I8 212 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 HPRT1P00492 218 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 ATP5IP56385 69 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-212ENST00000636194 H1FOOQ8IZA3 346 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-212ENST00000636194 WNT10AQ9GZT5 417 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 COL3A1P02461 1466 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-212ENST00000636194 TAF1LQ8IZX4 1826 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 hADV29S1A0JD25 119 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 TCRAP04437 139 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 RPL27AP46776 148 aaKnown RBP5.25□□□□□ -1.57
SCN1A-212ENST00000636194 DCAF12L2Q5VW00 463 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 SNHG12Q9BXW3 62 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 FGFBP2Q9BYJ0 223 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 HILPDAQ9Y5L2 63 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 FLG2Q5D862 2391 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-212ENST00000636194 PPIAL4EA0A075B759 164 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 LOC390937A0A1W2PQ73 354 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 C9JCJ5 164 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 NPIPB4C9JG80 1138 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 PPIAL4DF5H284 164 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 ATXN7O15265 892 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-212ENST00000636194 IGKV3-20P01619 116 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 PPIAL4FP0DN26 164 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 P2RY6Q15077 328 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 Q6AWC8 147 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 SLC25A28Q96A46 364 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 OR2H1Q9GZK4 316 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 TMEM74BQ9NUR3 256 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 PPIAL4AQ9Y536 164 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 CRYBG1Q9Y4K1 1723 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 TRAV8-6A0A0B4J262 113 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 A0A1B0GTH9 108 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 EVX1P49640 407 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 FHITP49789 147 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 CCL7P80098 99 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 DGCR2P98153 550 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 NR2C2APQ86WQ0 139 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 B9D1Q9UPM9 204 aa5.25□□□□□ -1.57
SCN1A-212ENST00000636194 IGHV3-43A0A0B4J1X8 118 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 SMIM18P0DKX4 95 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 IGHV3-43DP0DP04 118 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 ZNF252P-AS1Q0IIN9 211 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 MPV17L2Q567V2 206 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 GUSBP11Q6P575 273 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 Q6ZPB1 254 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-212ENST00000636194 GPRIN1Q7Z2K8 1008 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 SPSB4Q96A44 273 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 MS4A6EQ96DS6 147 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 QTRT1Q9BXR0 403 aaKnown RBP5.24□□□□□ -1.57
SCN1A-212ENST00000636194 ZNF107Q9UII5 783 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-212ENST00000636194 VWA8A3KMH1 1905 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 C9orf170A2RU37 121 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 PPP6CO00743 305 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 PTGESO14684 152 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms