RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 RAB9BQ9NP90 201 aa13.68□□□□□ -0.22
TMEM53-208ENST00000476724 SLC39A9Q9NUM3 307 aa13.68□□□□□ -0.22
TMEM53-208ENST00000476724 VAX2Q9UIW0 290 aa13.68□□□□□ -0.22
TMEM53-208ENST00000476724 CHD8Q9HCK8 2581 aa13.68□□□□□ -0.22
TMEM53-208ENST00000476724 hCG_1809904A0A1W2PP81 198 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 A0A1W2PR64 198 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 A0A1W2PRV1 198 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 MAP1LC3B2A6NCE7 125 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 ZFP92A6NM28 416 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 UBE2CO00762 179 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 ST8SIA5O15466 376 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 EGR1P18146 543 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 GPR12P47775 334 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 KLF3P57682 345 aaPredicted RBP13.67□□□□□ -0.22
TMEM53-208ENST00000476724 GNB2P62879 340 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 MORN2Q502X0 79 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 HEPN1Q6WQI6 88 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 GCSAMQ8N6F7 178 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 MAP1LC3BQ9GZQ8 125 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 ZNF665Q9H7R5 613 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 CLN8Q9UBY8 286 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 MARCH11A6NNE9 402 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 M0R1B8 84 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 ZG16O60844 167 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 HPRT1P00492 218 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 DUTP33316 252 aaKnown RBP13.67□□□□□ -0.22
TMEM53-208ENST00000476724 FAM27E3Q08E93 113 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 VWC2Q2TAL6 325 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 C22orf34Q6ZV56 151 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 MEGF10Q96KG7 1140 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 GNG12Q9UBI6 72 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 USF3Q68DE3 2245 aa13.67□□□□□ -0.22
TMEM53-208ENST00000476724 CEBPZOSA8MTT3 80 aa13.66□□□□□ -0.22
TMEM53-208ENST00000476724 A8MXE2 369 aa13.66□□□□□ -0.22
TMEM53-208ENST00000476724 DEFB108AA8MXU0 73 aa13.66□□□□□ -0.22
TMEM53-208ENST00000476724 F2RL2O00254 374 aa13.66□□□□□ -0.22
TMEM53-208ENST00000476724 NDUFS6O75380 124 aaKnown RBP13.66□□□□□ -0.22
TMEM53-208ENST00000476724 RBMXL2O75526 392 aaKnown RBP13.66□□□□□ -0.22
TMEM53-208ENST00000476724 RAB11AP62491 216 aa13.66□□□□□ -0.22
TMEM53-208ENST00000476724 NKX6-1P78426 367 aaPredicted RBP13.66□□□□□ -0.22
TMEM53-208ENST00000476724 AARDQ4LEZ3 155 aa13.66□□□□□ -0.22
TMEM53-208ENST00000476724 FAM90A2PQ658T7 463 aa13.66□□□□□ -0.22
TMEM53-208ENST00000476724 LRP11Q86VZ4 500 aa13.66□□□□□ -0.22
TMEM53-208ENST00000476724 R3HDM4Q96D70 268 aa13.66□□□□□ -0.22
TMEM53-208ENST00000476724 OR2V2Q96R30 315 aa13.66□□□□□ -0.22
TMEM53-208ENST00000476724 OR6C3Q9NZP0 311 aa13.66□□□□□ -0.22
TMEM53-208ENST00000476724 METTL1Q9UBP6 276 aaKnown RBP13.66□□□□□ -0.22
TMEM53-208ENST00000476724 GAB2Q9UQC2 676 aa13.66□□□□□ -0.22
TMEM53-208ENST00000476724 IGLV3-9A0A075B6K5 115 aa13.65□□□□□ -0.22
TMEM53-208ENST00000476724 ITGB1BP1O14713 200 aa13.65□□□□□ -0.22
TMEM53-208ENST00000476724 RBFOX2O43251 390 aaKnown RBP eCLIP13.65□□□□□ -0.22
TMEM53-208ENST00000476724 LHBP01229 141 aa13.65□□□□□ -0.22
TMEM53-208ENST00000476724 S100A8P05109 93 aa13.65□□□□□ -0.22
TMEM53-208ENST00000476724 MSMPQ1L6U9 139 aa13.65□□□□□ -0.22
TMEM53-208ENST00000476724 UNQ6494/PRO21346Q6UXR6 183 aa13.65□□□□□ -0.22
TMEM53-208ENST00000476724 CA5BP1Q8WTZ4 195 aa13.65□□□□□ -0.22
TMEM53-208ENST00000476724 LHX4Q969G2 390 aa13.65□□□□□ -0.22
TMEM53-208ENST00000476724 C12orf57Q99622 126 aa13.65□□□□□ -0.22
TMEM53-208ENST00000476724 DCTN5Q9BTE1 182 aa13.65□□□□□ -0.22
TMEM53-208ENST00000476724 TMEM242Q9NWH2 141 aa13.65□□□□□ -0.22
TMEM53-208ENST00000476724 MEOX2P50222 304 aa13.65□□□□□ -0.22
TMEM53-208ENST00000476724 ELLP55199 621 aaPredicted RBP13.65□□□□□ -0.22
TMEM53-208ENST00000476724 RPP30P78346 268 aaKnown RBP13.65□□□□□ -0.22
TMEM53-208ENST00000476724 NCR3LG1Q68D85 454 aa13.65□□□□□ -0.22
TMEM53-208ENST00000476724 SSX7Q7RTT5 188 aa13.65□□□□□ -0.22
TMEM53-208ENST00000476724 RPP25LQ8N5L8 163 aaKnown RBP13.65□□□□□ -0.22
TMEM53-208ENST00000476724 ZCCHC14Q8WYQ9 949 aaKnown RBP13.65□□□□□ -0.22
TMEM53-208ENST00000476724 PCNX1Q96RV3 2341 aa13.64□□□□□ -0.23
TMEM53-208ENST00000476724 CTXND1A0A1B0GTU2 59 aa13.64□□□□□ -0.23
TMEM53-208ENST00000476724 C17orf112F2Z3M2 114 aa13.64□□□□□ -0.23
TMEM53-208ENST00000476724 SOX15O60248 233 aa13.64□□□□□ -0.23
TMEM53-208ENST00000476724 CD55P08174 381 aa13.64□□□□□ -0.23
TMEM53-208ENST00000476724 KIR2DS2P43631 304 aa13.64□□□□□ -0.23
TMEM53-208ENST00000476724 GATA4P43694 442 aa13.64□□□□□ -0.23
TMEM53-208ENST00000476724 FGF8P55075 233 aaPredicted RBP13.64□□□□□ -0.23
TMEM53-208ENST00000476724 SELENOVP59797 346 aa13.64□□□□□ -0.23
TMEM53-208ENST00000476724 DIDO1Q9BTC0 2240 aaKnown RBP13.64□□□□□ -0.23
TMEM53-208ENST00000476724 IGHV2-5P01817 119 aa13.63□□□□□ -0.23
TMEM53-208ENST00000476724 FGF7P21781 194 aa13.63□□□□□ -0.23
TMEM53-208ENST00000476724 LOXL3P58215 753 aa13.63□□□□□ -0.23
TMEM53-208ENST00000476724 MOGAT3Q86VF5 341 aa13.63□□□□□ -0.23
TMEM53-208ENST00000476724 ZNF709Q8N972 641 aa13.63□□□□□ -0.23
TMEM53-208ENST00000476724 OR52E5Q8NH55 327 aa13.63□□□□□ -0.23
TMEM53-208ENST00000476724 ZDHHC16Q969W1 377 aa13.63□□□□□ -0.23
TMEM53-208ENST00000476724 ZNF727A8MUV8 499 aa13.63□□□□□ -0.23
TMEM53-208ENST00000476724 FCGR3BO75015 233 aa13.63□□□□□ -0.23
TMEM53-208ENST00000476724 PROP1O75360 226 aa13.63□□□□□ -0.23
TMEM53-208ENST00000476724 EIF3GO75821 320 aaKnown RBP eCLIP13.63□□□□□ -0.23
TMEM53-208ENST00000476724 MDKP21741 143 aaPredicted RBP13.63□□□□□ -0.23
TMEM53-208ENST00000476724 CCKARP32238 428 aa13.63□□□□□ -0.23
TMEM53-208ENST00000476724 RAB7AP51149 207 aa13.63□□□□□ -0.23
TMEM53-208ENST00000476724 ELOBQ15370 118 aa13.63□□□□□ -0.23
TMEM53-208ENST00000476724 LTC4SQ16873 150 aa13.63□□□□□ -0.23
TMEM53-208ENST00000476724 IQCF2Q8IXL9 164 aa13.63□□□□□ -0.23
TMEM53-208ENST00000476724 TCEAL7Q9BRU2 100 aa13.63□□□□□ -0.23
TMEM53-208ENST00000476724 ATRXP46100 2492 aa13.62□□□□□ -0.23
TMEM53-208ENST00000476724 CADP27708 2225 aa13.62□□□□□ -0.23
TMEM53-208ENST00000476724 OR2B8PP59922 312 aa13.62□□□□□ -0.23
TMEM53-208ENST00000476724 SPCS3P61009 180 aa13.62□□□□□ -0.23
TMEM53-208ENST00000476724 ERVK-16P61578 105 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms