RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 F2RP25116 425 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 DEFA5Q01523 94 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 TMEM42Q69YG0 159 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 ACOT7LQ6ZUV0 252 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 BIVMQ86UB2 503 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 NOXA1Q86UR1 476 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 OR9G1Q8NH87 305 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 DEDD2Q8WXF8 326 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 TREM1Q9NP99 234 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 PLSCR3Q9NRY6 295 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 METTL1Q9UBP6 276 aaKnown RBP4.51□□□□□ -1.69
VPS13C-209ENST00000560637 FLNAP21333 2647 aaKnown RBP4.51□□□□□ -1.69
VPS13C-209ENST00000560637 ANKRD34BA5PLL1 514 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 C17orf98A8MV24 154 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 GPR137BO60478 399 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 GAPDHP04406 335 aaKnown RBP4.51□□□□□ -1.69
VPS13C-209ENST00000560637 ACAA1P09110 424 aaPredicted RBP4.51□□□□□ -1.69
VPS13C-209ENST00000560637 WNT2P09544 360 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 SULT1A3P0DMM9 295 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 SULT1A4P0DMN0 295 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 PTBP1P26599 531 aaKnown RBP eCLIP4.51□□□□□ -1.691e-9■■■■■ 28.1
VPS13C-209ENST00000560637 CAMLGP49069 296 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 SCAND1P57086 179 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 ERHP84090 104 aaKnown RBP4.51□□□□□ -1.69
VPS13C-209ENST00000560637 FAM74A1Q5RGS3 127 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 AKR1C8PQ5T2L2 129 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 LHFPL4Q7Z7J7 247 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 SAXO1Q8IYX7 474 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 OR10Z1Q8NGY1 313 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 GAFA1Q96PS6 74 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 C5orf66Q9H5L9 145 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 RPUSD1Q9UJJ7 312 aaKnown RBP4.51□□□□□ -1.69
VPS13C-209ENST00000560637 AMMECR1Q9Y4X0 333 aaPredicted RBP4.51□□□□□ -1.69
VPS13C-209ENST00000560637 BAHCC1Q9P281 2608 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 MPTX1A8MV57 137 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 SFT2D2O95562 160 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 IL5P05113 134 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 PSMB6P28072 239 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 RAP2BP61225 183 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 SRPXP78539 464 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 Q56UQ5 140 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 CXorf66Q5JRM2 361 aaPredicted RBP4.51□□□□□ -1.69
VPS13C-209ENST00000560637 C10orf55Q5SWW7 151 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 TRAT1Q6PIZ9 186 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 Q6ZNX1 250 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 OR10A7Q8NGE5 316 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 RBPMSQ93062 196 aaKnown RBP4.51□□□□□ -1.69
VPS13C-209ENST00000560637 RNF166Q96A37 237 aaPredicted RBP4.51□□□□□ -1.69
VPS13C-209ENST00000560637 TP53RKQ96S44 253 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 HRH4Q9H3N8 390 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 HSF4Q9ULV5 492 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 POMT1Q9Y6A1 747 aa4.51□□□□□ -1.69
VPS13C-209ENST00000560637 NUP210LQ5VU65 1888 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 IGLV3-9A0A075B6K5 115 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 IGHV3-49A0A0A0MS15 119 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 UBE2L5PA0A1B0GUS4 154 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 A0A1W2PPR1 153 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 A0A1W2PPV4 95 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 ZNF729A6NN14 1252 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-209ENST00000560637 IFNL4K9M1U5 179 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 CHST1O43916 411 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 PGLYRP1O75594 196 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-209ENST00000560637 CTSDP07339 412 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-209ENST00000560637 PLA2G2AP14555 144 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 SLC35E4Q6ICL7 350 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 VMO1Q7Z5L0 202 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 FAM213BQ8TBF2 198 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 TMEM230Q96A57 120 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 PTX4Q96A99 478 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 MOB3AQ96BX8 217 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 HYLS1Q96M11 299 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 CMTM3Q96MX0 182 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 SLC25A22Q9H936 323 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 PATZ1Q9HBE1 687 aaKnown RBP4.5□□□□□ -1.69
VPS13C-209ENST00000560637 DPM3Q9P2X0 92 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 DYSFO75923 2080 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 PCSK5Q92824 1860 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 SAA2-SAA4A0A096LPE2 208 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 LEUTXA8MZ59 168 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 TIMM23O14925 209 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 RAMP3O60896 148 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 IGHV3-11P01762 117 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 SAA2P0DJI9 122 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-209ENST00000560637 NQO2P16083 231 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 AGAP20933 346 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 ECI1P42126 302 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 RAB11AP62491 216 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 ACSM6Q6P461 480 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 LINC00596Q86U02 117 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 KIR3DL3Q8N743 410 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 LILRB1Q8NHL6 650 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-209ENST00000560637 TMED6Q8WW62 240 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 TM2D1Q9BX74 207 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 EIF5A2Q9GZV4 153 aaKnown RBP4.5□□□□□ -1.69
VPS13C-209ENST00000560637 NXF2Q9GZY0 626 aaKnown RBP4.5□□□□□ -1.69
VPS13C-209ENST00000560637 BEX4Q9NWD9 120 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-209ENST00000560637 SDHAF2Q9NX18 166 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 CTSZQ9UBR2 303 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 C22orf46C9J442 243 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 J3QR06 171 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms