RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 MSL2Q9HCI7 577 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 LOC105371242A0A075B767 164 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 TRGC1P0CF51 173 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 PRDX2P32119 198 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 DLX6P56179 175 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 MEIG1Q5JSS6 88 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 GCSAMQ8N6F7 178 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 SSC4DQ8WTU2 575 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 ADAT3Q96EY9 351 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-204ENST00000423058 C12orf57Q99622 126 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 IGKV3D-15A0A087WSY6 115 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 KCNAB3O43448 404 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 IGKV3-15P01624 115 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 HPXP02790 462 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 LIFP15018 202 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 SUCLG1P53597 346 aaKnown RBP6.01□□□□□ -1.45
SCN1A-204ENST00000423058 DHRS2Q13268 280 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 LINC00303Q3SY05 128 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 TMEM179BQ7Z7N9 219 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 CLRN3Q8NCR9 226 aa6.01□□□□□ -1.45
SCN1A-204ENST00000423058 MARS2Q96GW9 593 aaKnown RBP6.01□□□□□ -1.45
SCN1A-204ENST00000423058 METTL1Q9UBP6 276 aaKnown RBP6.01□□□□□ -1.45
SCN1A-204ENST00000423058 WNK3Q9BYP7 1800 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 SPAARA0A1B0GVQ0 90 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 SLC25A20O43772 301 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 ZNF253O75346 499 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 HPRT1P00492 218 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 PRSS12P56730 875 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 B2MP61769 119 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 TMEM255AQ5JRV8 349 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 TMEM183AQ8IXX5 376 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 EXOGQ9Y2C4 368 aaKnown RBP6□□□□□ -1.45
SCN1A-204ENST00000423058 DOCK8Q8NF50 2099 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 KIAA1551Q9HCM1 1747 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 LIPT2A6NK58 231 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 ZNF205O95201 554 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 HBZP02008 142 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 HOXB1P14653 301 aaPredicted RBP6□□□□□ -1.45
SCN1A-204ENST00000423058 ZP3P21754 424 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 HIKESHIQ53FT3 197 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 DCAF12L2Q5VW00 463 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 OR5AU1Q8NGC0 362 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 POM121Q96HA1 1249 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 MAP1LC3AQ9H492 121 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 MTFP1Q9UDX5 166 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 COL22A1Q8NFW1 1626 aaPredicted RBP6□□□□□ -1.45
SCN1A-204ENST00000423058 ETHE1O95571 254 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 FTH1P19P0C7X4 201 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 CD99P14209 185 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 RPL27AP46776 148 aaKnown RBP6□□□□□ -1.45
SCN1A-204ENST00000423058 DMRTC1Q5HYR2 192 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 ZNF680Q8NEM1 530 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 OR4B1Q8NGF8 309 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 SSMEM1Q8WWF3 244 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 TMEM45BQ96B21 275 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 PRSS50Q9UI38 385 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 WIPI2Q9Y4P8 454 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 WNK2Q9Y3S1 2297 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 CADP27708 2225 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 STAG3L3P0CL85 134 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 SLC25A35Q3KQZ1 300 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 C17orf47Q8NEP4 570 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 NPVFQ9HCQ7 196 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 SLC25A37Q9NYZ2 338 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 UBR3Q6ZT12 1888 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 MAVSQ7Z434 540 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 GTSCR1Q86UQ5 136 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 ABHD3Q8WU67 409 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 NUDT11Q96G61 164 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 ELOVL5Q9NYP7 299 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 OPN4Q9UHM6 478 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 TINAGQ9UJW2 476 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 IGKV3D-11A0A0A0MRZ8 115 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 A0A0G2JLM5 398 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 SNURFLB1AK76 121 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 RECKO95980 971 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 IGKV3-11P04433 115 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 GPX1P07203 203 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 FCARP24071 287 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 UNQ5815/PRO19632Q6UWF5 114 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 HMGCLL1Q8TB92 370 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 SFXN3Q9BWM7 321 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 A0A1W2PQM1 296 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 OR2W5A6NFC9 320 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 SMAD7O15105 426 aaKnown RBP6□□□□□ -1.45
SCN1A-204ENST00000423058 RPL34P49207 117 aaKnown RBP6□□□□□ -1.45
SCN1A-204ENST00000423058 BSXQ3C1V8 233 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 LHX8Q68G74 356 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 MRM1Q6IN84 353 aaKnown RBP6□□□□□ -1.45
SCN1A-204ENST00000423058 FAM159AQ6UWV7 190 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 TMEM92Q6UXU6 159 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 MMD2Q8IY49 270 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 ADAMTS17Q8TE56 1095 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 ZNF418Q8TF45 676 aaPredicted RBP6□□□□□ -1.45
SCN1A-204ENST00000423058 ORAI1Q96D31 301 aa6□□□□□ -1.45
SCN1A-204ENST00000423058 SHANK3Q9BYB0 1731 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.99□□□□□ -1.45
SCN1A-204ENST00000423058 H7C2G1 150 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 PPP1R1AQ13522 171 aa5.99□□□□□ -1.45
SCN1A-204ENST00000423058 DNM1P46Q6ZS02 220 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms