RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 BABAM2Q9NXR7 383 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 IDI2-AS1Q9NZ38 188 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 DIMT1Q9UNQ2 313 aaKnown RBP13.28□□□□□ -0.28
USP40-212ENST00000473191 PSG11Q9UQ72 335 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 ST3GAL6Q9Y274 331 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 ZNF281Q9Y2X9 895 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 TRBV5-5A0A0J9YX44 114 aa13.27□□□□□ -0.29
USP40-212ENST00000473191 PNMA8CA0A1B0GUJ8 204 aa13.27□□□□□ -0.29
USP40-212ENST00000473191 NPIPB11E5RHQ5 1161 aa13.27□□□□□ -0.29
USP40-212ENST00000473191 MAGEB3O15480 346 aa13.27□□□□□ -0.29
USP40-212ENST00000473191 IL1AP01583 271 aa13.27□□□□□ -0.29
USP40-212ENST00000473191 ALDOBP05062 364 aa13.27□□□□□ -0.29
USP40-212ENST00000473191 ZNF93P35789 620 aaPredicted RBP13.27□□□□□ -0.29
USP40-212ENST00000473191 DMKNQ6E0U4 476 aaPredicted RBP13.27□□□□□ -0.29
USP40-212ENST00000473191 OR56B4Q8NH76 319 aa13.27□□□□□ -0.29
USP40-212ENST00000473191 OR9G1Q8NH87 305 aa13.27□□□□□ -0.29
USP40-212ENST00000473191 CAPSLQ8WWF8 208 aa13.27□□□□□ -0.29
USP40-212ENST00000473191 RDH12Q96NR8 316 aa13.27□□□□□ -0.29
USP40-212ENST00000473191 DPCDQ9BVM2 203 aaPredicted RBP13.27□□□□□ -0.29
USP40-212ENST00000473191 TMEM138Q9NPI0 162 aa13.27□□□□□ -0.29
USP40-212ENST00000473191 A0A1W2PPI3 338 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 FAM90A18PA6NE21 464 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 FAM90A16PA6NEW6 464 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 ERICH4A6NGS2 130 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 FAM90A20PA6NIJ5 464 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 FAM90A9PA6NNJ1 464 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 FAM90A12PA8MX19 464 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 FAM90A5PA8MXJ8 464 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 OR2F2O95006 317 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 SNRNP70P08621 437 aaKnown RBP13.26□□□□□ -0.29
USP40-212ENST00000473191 FAM90A15PP0C7V4 464 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 FAM90A13PP0C7W8 464 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 FAM90A14PP0C7W9 464 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 FAM90A24PP0C7X0 464 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 BDKRB2P30411 391 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 BRS3P32247 399 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 PRRX1P54821 245 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 RBM11P57052 281 aaKnown RBP13.26□□□□□ -0.29
USP40-212ENST00000473191 TMPRSS11AQ6ZMR5 421 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 OSR2Q8N2R0 312 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 DRAM1Q8N682 238 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 DTX3Q8N9I9 347 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 ZNF565Q8N9K5 539 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 TMEM80Q96HE8 168 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 ZNF184Q99676 751 aaPredicted RBP13.26□□□□□ -0.29
USP40-212ENST00000473191 BARHL1Q9BZE3 327 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 LINC00574Q9H8X3 128 aa13.26□□□□□ -0.29
USP40-212ENST00000473191 XPNPEP2O43895 674 aa13.25□□□□□ -0.29
USP40-212ENST00000473191 OR7C1O76099 320 aaPredicted RBP13.25□□□□□ -0.29
USP40-212ENST00000473191 CD2P06729 351 aa13.25□□□□□ -0.29
USP40-212ENST00000473191 C21orf33P30042 268 aaPredicted RBP13.25□□□□□ -0.29
USP40-212ENST00000473191 EMX1Q04741 257 aaPredicted RBP13.25□□□□□ -0.29
USP40-212ENST00000473191 C9orf152Q5JTZ5 239 aa13.25□□□□□ -0.29
USP40-212ENST00000473191 C16orf82Q7Z2V1 217 aa13.25□□□□□ -0.29
USP40-212ENST00000473191 CENPVQ7Z7K6 275 aaPredicted RBP13.25□□□□□ -0.29
USP40-212ENST00000473191 OR52N1Q8NH53 320 aa13.25□□□□□ -0.29
USP40-212ENST00000473191 HAVCR2Q8TDQ0 301 aa13.25□□□□□ -0.29
USP40-212ENST00000473191 CCDC107Q8WV48 283 aa13.25□□□□□ -0.29
USP40-212ENST00000473191 TOMM40LQ969M1 308 aa13.25□□□□□ -0.29
USP40-212ENST00000473191 RPEQ96AT9 228 aa13.25□□□□□ -0.29
USP40-212ENST00000473191 OR14A2Q96R54 314 aa13.25□□□□□ -0.29
USP40-212ENST00000473191 METTL9Q9H1A3 318 aa13.25□□□□□ -0.29
USP40-212ENST00000473191 IL36GQ9NZH8 169 aa13.25□□□□□ -0.29
USP40-212ENST00000473191 EXOSC1Q9Y3B2 195 aaKnown RBP13.25□□□□□ -0.29
USP40-212ENST00000473191 IGHV3-43A0A0B4J1X8 118 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 C15orf65H3BRN8 121 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 PIN1P1O15428 100 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 IGHV3-43DP0DP04 118 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 MYL12AP19105 171 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 CEACAM3P40198 252 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 VHLP40337 213 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 PPP3R1P63098 170 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 PAX5Q02548 391 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 ST3GAL4Q11206 333 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 RIPK1Q13546 671 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 HNF4GQ14541 408 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 RCN1Q15293 331 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 SLC22A6Q4U2R8 563 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 NHLRC3Q5JS37 347 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 Q6ZPA2 131 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 C5orf24Q7Z6I8 188 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 MYDGFQ969H8 173 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 NCOR1P1Q9H4R4 102 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 IFT22Q9H7X7 185 aa13.24□□□□□ -0.29
USP40-212ENST00000473191 TRBV5-7A0A0A0MS05 114 aa13.23□□□□□ -0.29
USP40-212ENST00000473191 IGHV3-72A0A0B4J1Y9 119 aa13.23□□□□□ -0.29
USP40-212ENST00000473191 ANKRD65E5RJM6 399 aa13.23□□□□□ -0.29
USP40-212ENST00000473191 CSTBP04080 98 aaKnown RBP13.23□□□□□ -0.29
USP40-212ENST00000473191 IGLL1P15814 213 aa13.23□□□□□ -0.29
USP40-212ENST00000473191 REG1BP48304 166 aa13.23□□□□□ -0.29
USP40-212ENST00000473191 INSL4Q14641 139 aa13.23□□□□□ -0.29
USP40-212ENST00000473191 Q499Y3 187 aa13.23□□□□□ -0.29
USP40-212ENST00000473191 ATAD3CQ5T2N8 411 aa13.23□□□□□ -0.29
USP40-212ENST00000473191 TTC23Q5W5X9 447 aa13.23□□□□□ -0.29
USP40-212ENST00000473191 DHRSXQ8N5I4 330 aa13.23□□□□□ -0.29
USP40-212ENST00000473191 OR4F17Q8NGA8 305 aa13.23□□□□□ -0.29
USP40-212ENST00000473191 MUL1Q969V5 352 aa13.23□□□□□ -0.29
USP40-212ENST00000473191 CREB3L1Q96BA8 519 aa13.23□□□□□ -0.29
USP40-212ENST00000473191 PHF21AQ96BD5 680 aa13.23□□□□□ -0.29
USP40-212ENST00000473191 CPNE2Q96FN4 548 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms