RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 C9orf66Q5T8R8 295 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 ZNF57Q68EA5 555 aaPredicted RBP3.68□□□□□ -1.82
CD44-220ENST00000525688 FAM71E1Q6IPT2 247 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 C12orf54Q6X4T0 127 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 TMEM135Q86UB9 458 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 TMEM86AQ8N2M4 240 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 PNKDQ8N490 385 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 ZADH2Q8N4Q0 377 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 OR52E4Q8NGH9 312 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 OR4C13Q8NGP0 309 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 OR10K1Q8NGX5 313 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 RNASE11Q8TAA1 199 aaKnown RBP3.68□□□□□ -1.82
CD44-220ENST00000525688 STOML3Q8TAV4 291 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 Q8WTZ3 238 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 EEF1AKMT1Q8WVE0 214 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 ANKRD36BP1Q96IX9 119 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 MAGEB18Q96M61 343 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 P2RX4Q99571 388 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 TSC22D3Q99576 134 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 PKMYT1Q99640 499 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 MCHR1Q99705 422 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 MLXQ9UH92 298 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 RIMS3Q9UJD0 308 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 OR52A1Q9UKL2 312 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 MMP17Q9ULZ9 603 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 SLC22A7Q9Y694 548 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 TMEM56-RWDD3S4R434 201 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 CLUHO75153 1309 aa3.68□□□□□ -1.82
CD44-220ENST00000525688 DENND4AQ7Z401 1863 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 TEX48A0A1B0GUV7 120 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 DAPL1A0PJW8 107 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 ZNF98A6NK75 572 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 NCBP2LA6PVI3 153 aaKnown RBP3.67□□□□□ -1.82
CD44-220ENST00000525688 FOXI3A8MTJ6 420 aaPredicted RBP3.67□□□□□ -1.82
CD44-220ENST00000525688 B4DXG7 233 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 GABRPO00591 440 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 BET1O15155 118 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 CCL16O15467 120 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 MGRN1O60291 552 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 PLIN3O60664 434 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 KLF8O95600 359 aaPredicted RBP3.67□□□□□ -1.82
CD44-220ENST00000525688 CD55P08174 381 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 SNRPCP09234 159 aaKnown RBP3.67□□□□□ -1.82
CD44-220ENST00000525688 ADRB3P13945 408 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 TCP1P17987 556 aaKnown RBP3.67□□□□□ -1.82
CD44-220ENST00000525688 PYCR1P32322 319 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 EFNA3P52797 238 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 ARPP19P56211 112 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 TAS2R41P59536 307 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 ARG2P78540 354 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 MRPS11P82912 194 aaKnown RBP3.67□□□□□ -1.82
CD44-220ENST00000525688 FMODQ06828 376 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 LTB4RQ15722 352 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 UBE2UQ5VVX9 321 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 OLFML2AQ68BL7 652 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 REP15Q6BDI9 236 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 ZNF774Q6NX45 483 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 C5orf46Q6UWT4 87 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 ZNF497Q6ZNH5 498 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 TMUB2Q71RG4 321 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 KRTAP7-1Q8IUC3 87 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 SKA3Q8IX90 412 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 SLC34A3Q8N130 599 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 Q8N377 158 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 STX19Q8N4C7 294 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 ZNF561Q8N587 486 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 ZNF676Q8N7Q3 588 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 ARIH2OSQ8N7S6 290 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 CSNK1G2-AS1Q8NCQ2 148 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 OR2Z1Q8NG97 314 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 OR10G3Q8NGC4 313 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 OR2A1Q8NGT9 310 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 OR10A6Q8NH74 314 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 ZNF564Q8TBZ8 553 aaPredicted RBP3.67□□□□□ -1.82
CD44-220ENST00000525688 SPPL2BQ8TCT7 592 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 C2orf15Q8WU43 125 aaKnown RBP3.67□□□□□ -1.82
CD44-220ENST00000525688 KCTD4Q8WVF5 259 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 FGF11Q92914 225 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 DDIT4LQ96D03 193 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 ZHX1-C8orf76Q96EF9 292 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 SEC22CQ9BRL7 303 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 TMED9Q9BVK6 235 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 COQ4Q9Y3A0 265 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 NUBP2Q9Y5Y2 271 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 C2orf16Q68DN1 1984 aa3.67□□□□□ -1.82
CD44-220ENST00000525688 DOCK6Q96HP0 2047 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 DOCK8Q8NF50 2099 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 A0A0J9YWU9 116 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 FAM240AA0A1B0GVK7 77 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 MYBPHLA2RUH7 354 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 RPL37AP8A6NKH3 93 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 PHYHO14832 338 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 HCRTO43612 131 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 SLC2A10O95528 541 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 APOC1P02654 83 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 HSD17B1P14061 328 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 FOLR1P15328 257 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 TAC1P20366 129 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 IGFBP5P24593 272 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 SHC1P29353 583 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms