RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ZNF3P17036 446 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 LOXP28300 417 aaPredicted RBP1.91□□□□□ -2.1
HMGB1-201ENST00000326004 TEAD1P28347 426 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 SSTR5P35346 364 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 UGT2B10P36537 528 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 RBM34P42696 430 aaKnown RBP1.91□□□□□ -2.1
HMGB1-201ENST00000326004 CBX5P45973 191 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 GALR1P47211 349 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 P2RX1P51575 399 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 NDUFA8P51970 172 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 KIR2DS1Q14954 304 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 BCL2A1Q16548 175 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 COX19Q49B96 90 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 ZNF684Q5T5D7 378 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 AVPI1Q5T686 147 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 FAM27D1Q5T7N8 215 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 SHISA6Q6ZSJ9 500 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 SSX6Q7RTT6 188 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 FAM19A1Q7Z5A9 133 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 TMEM25Q86YD3 366 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 CLVS1Q8IUQ0 354 aaPredicted RBP1.91□□□□□ -2.1
HMGB1-201ENST00000326004 ITPRIPQ8IWB1 547 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 SLC30A8Q8IWU4 369 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 NATD1Q8N6N6 113 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 METTL13Q8N6R0 699 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 GPR26Q8NDV2 337 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 OR11H7Q8NGC8 314 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 ZNF461Q8TAF7 563 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 PIFOQ8TCI5 191 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 ADTRPQ96IZ2 230 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 ZNF514Q96K75 400 aaPredicted RBP1.91□□□□□ -2.1
HMGB1-201ENST00000326004 CCDC42Q96M95 316 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 CATSPER2Q96P56 530 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 TIMM17AQ99595 171 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 SCRT1Q9BWW7 348 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 ANGPTL4Q9BY76 406 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 SPNS1Q9H2V7 528 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 OR51B5Q9H339 312 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 PSTPIP2Q9H939 334 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 C8orf4Q9NR00 106 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 CFL2Q9Y281 166 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 ZNF257Q9Y2Q1 563 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 ACOT9Q9Y305 439 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 FADS3Q9Y5Q0 445 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 USH1CQ9Y6N9 552 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 CHD9Q3L8U1 2897 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 CEP295Q9C0D2 2601 aa1.9□□□□□ -2.1
HMGB1-201ENST00000326004 VWA8A3KMH1 1905 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 TRAV40A0A0B4J280 105 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 IGHV3OR16-9A0A0B4J2B5 98 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 IGHV2OR16-5A0A0B4J2B6 119 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 A0A0J9YXV3 536 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 C7orf66A4D0T2 115 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 VPS37CA5D8V6 355 aaPredicted RBP1.9□□□□□ -2.11
HMGB1-201ENST00000326004 LINC01619G3V211 115 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 M0QXV9 152 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 PLPP3O14495 311 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 BIRC5O15392 142 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 SGCEO43556 437 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF207O43670 478 aaKnown RBP1.9□□□□□ -2.11
HMGB1-201ENST00000326004 SHOX2O60902 331 aaPredicted RBP1.9□□□□□ -2.11
HMGB1-201ENST00000326004 NIPSNAP2O75323 286 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 SERPINB7O75635 380 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 TTC4O95801 387 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 APCSP02743 223 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 TFPTP0C1Z6 253 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 OR5AL1P0C617 328 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 LINC00869P0C866 280 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF286BP0CG31 522 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 RD3LP0DJH9 198 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 C1GALT1C1LP0DN25 315 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 MYL9P24844 172 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 CD40LGP29965 261 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 CD70P32970 193 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 MAGEA3P43357 314 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 BLVRAP53004 296 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 SYNJ2BPP57105 145 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 UBE2G2P60604 165 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 GNGT1P63211 74 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 SLC35A1P78382 337 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 KDSRQ06136 332 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 TPBGQ13641 420 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 OR1Q1Q15612 314 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 OR4D1Q15615 310 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 MOGQ16653 247 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 CLVS2Q5SYC1 327 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF880Q6PDB4 577 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 C3orf62Q6ZUJ4 267 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 KRTAP5-2Q701N4 177 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 AHSA2Q719I0 299 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 BOD1L2Q8IYS8 172 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 LGI3Q8N145 548 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 LRRC52Q8N7C0 313 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF615Q8N8J6 731 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 COX18Q8N8Q8 333 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 OR10Z1Q8NGY1 313 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 IFT81Q8WYA0 676 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 FLYWCH2Q96CP2 140 aaKnown RBP1.9□□□□□ -2.11
HMGB1-201ENST00000326004 HAUS1Q96CS2 278 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 ANKRD36BP1Q96IX9 119 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms