RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 PCDH11XQ9BZA7 1347 aa11.19□□□□□ -0.62
VCAN-210ENST00000513960 PCDH11YQ9BZA8 1340 aa11.19□□□□□ -0.62
VCAN-210ENST00000513960 A0A1B0GVL5 298 aa11.18□□□□□ -0.62
VCAN-210ENST00000513960 CFAP100Q494V2 611 aa11.18□□□□□ -0.62
VCAN-210ENST00000513960 MCMDC2Q4G0Z9 681 aa11.18□□□□□ -0.62
VCAN-210ENST00000513960 NEK1Q96PY6 1258 aa11.18□□□□□ -0.62
VCAN-210ENST00000513960 DCCP43146 1447 aa11.18□□□□□ -0.62
VCAN-210ENST00000513960 SCN11AQ9UI33 1791 aa11.18□□□□□ -0.62
VCAN-210ENST00000513960 ALS2Q96Q42 1657 aa11.18□□□□□ -0.62
VCAN-210ENST00000513960 ADAMTS7Q9UKP4 1686 aa11.18□□□□□ -0.62
VCAN-210ENST00000513960 GSDMDP57764 484 aa11.18□□□□□ -0.62
VCAN-210ENST00000513960 GOLGA8FQ08AF8 430 aa11.18□□□□□ -0.62
VCAN-210ENST00000513960 GOLGA8DPQ0D2H9 430 aa11.18□□□□□ -0.62
VCAN-210ENST00000513960 COL9A3Q14050 684 aaPredicted RBP11.18□□□□□ -0.62
VCAN-210ENST00000513960 ZNF330Q9Y3S2 320 aaPredicted RBP11.18□□□□□ -0.62
VCAN-210ENST00000513960 Q6ZUG5 572 aa11.18□□□□□ -0.62
VCAN-210ENST00000513960 ZBTB3Q9H5J0 574 aa11.18□□□□□ -0.62
VCAN-210ENST00000513960 POLR3DP05423 398 aaPredicted RBP11.18□□□□□ -0.62
VCAN-210ENST00000513960 HAUS7Q99871 368 aa11.18□□□□□ -0.62
VCAN-210ENST00000513960 XPO4Q9C0E2 1151 aaKnown RBP11.18□□□□□ -0.62
VCAN-210ENST00000513960 RSPH14Q9UHP6 348 aa11.18□□□□□ -0.62
VCAN-210ENST00000513960 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.18□□□□□ -0.62
VCAN-210ENST00000513960 PLEKHG2Q9H7P9 1386 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 OAS2P29728 719 aaKnown RBP11.17□□□□□ -0.62
VCAN-210ENST00000513960 TTLL7Q6ZT98 887 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 A1BGP04217 495 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 PNMA6AP0CW24 399 aaPredicted RBP11.17□□□□□ -0.62
VCAN-210ENST00000513960 EVCP57679 992 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 ST3GAL1Q11201 340 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 CCDC129Q6ZRS4 1044 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 CHST3Q7LGC8 479 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 TAF6LQ9Y6J9 622 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 NBPF26B4DH59 902 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 ERVV-2B6SEH9 535 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 H7C1W4 665 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 GOLIM4O00461 696 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 IL15P40933 162 aaPredicted RBP11.17□□□□□ -0.62
VCAN-210ENST00000513960 TSGA10IPQ3SY00 556 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 NBPF14Q5TI25 921 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 NBPF10Q6P3W6 841 aaKnown RBP11.17□□□□□ -0.62
VCAN-210ENST00000513960 CREBRFQ8IUR6 639 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 NBPF15Q8N660 670 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 KBTBD3Q8NAB2 608 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 AK7Q96M32 723 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 ZNF396Q96N95 335 aaPredicted RBP11.17□□□□□ -0.62
VCAN-210ENST00000513960 SEC62Q99442 399 aaKnown RBP11.17□□□□□ -0.62
VCAN-210ENST00000513960 CWC15Q9P013 229 aaKnown RBP11.17□□□□□ -0.62
VCAN-210ENST00000513960 C5P01031 1676 aa11.17□□□□□ -0.62
VCAN-210ENST00000513960 EVA1CP58658 441 aa11.16□□□□□ -0.62
VCAN-210ENST00000513960 GNG11P61952 73 aa11.16□□□□□ -0.62
VCAN-210ENST00000513960 PPP1R13BQ96KQ4 1090 aa11.16□□□□□ -0.62
VCAN-210ENST00000513960 UTP14AQ9BVJ6 771 aaKnown RBP11.16□□□□□ -0.62
VCAN-210ENST00000513960 ALDH8A1Q9H2A2 487 aaPredicted RBP11.16□□□□□ -0.62
VCAN-210ENST00000513960 TOMM22Q9NS69 142 aa11.16□□□□□ -0.62
VCAN-210ENST00000513960 WDR17Q8IZU2 1322 aa11.16□□□□□ -0.62
VCAN-210ENST00000513960 CPDO75976 1380 aa11.16□□□□□ -0.62
VCAN-210ENST00000513960 COL15A1P39059 1388 aa11.16□□□□□ -0.62
VCAN-210ENST00000513960 TIMM10P62072 90 aa11.16□□□□□ -0.62
VCAN-210ENST00000513960 RAD51AP2Q09MP3 1159 aa11.16□□□□□ -0.62
VCAN-210ENST00000513960 MCM6Q14566 821 aa11.16□□□□□ -0.62
VCAN-210ENST00000513960 OTUD7BQ6GQQ9 843 aa11.16□□□□□ -0.62
VCAN-210ENST00000513960 MRFAP1L1Q96HT8 127 aa11.16□□□□□ -0.62
VCAN-210ENST00000513960 STRN4Q9NRL3 753 aa11.16□□□□□ -0.62
VCAN-210ENST00000513960 CTAGE5O15320 804 aa11.16□□□□□ -0.62
VCAN-210ENST00000513960 TOB2Q14106 344 aaPredicted RBP11.16□□□□□ -0.62
VCAN-210ENST00000513960 USPL1Q5W0Q7 1092 aa11.16□□□□□ -0.62
VCAN-210ENST00000513960 LEKR1Q6ZMV7 388 aa11.16□□□□□ -0.62
VCAN-210ENST00000513960 NCOA5Q9HCD5 579 aaKnown RBP11.16□□□□□ -0.62
VCAN-210ENST00000513960 CASP7P55210 303 aa11.15□□□□□ -0.62
VCAN-210ENST00000513960 TXLNBQ8N3L3 684 aa11.15□□□□□ -0.62
VCAN-210ENST00000513960 PAG1Q9NWQ8 432 aa11.15□□□□□ -0.62
VCAN-210ENST00000513960 ELP1O95163 1332 aa11.15□□□□□ -0.62
VCAN-210ENST00000513960 IL2RBP14784 551 aa11.15□□□□□ -0.62
VCAN-210ENST00000513960 CCZ1BP86790 482 aa11.15□□□□□ -0.62
VCAN-210ENST00000513960 CCZ1P86791 482 aaPredicted RBP11.15□□□□□ -0.62
VCAN-210ENST00000513960 FOXO4P98177 505 aa11.15□□□□□ -0.62
VCAN-210ENST00000513960 USP28Q96RU2 1077 aa11.15□□□□□ -0.62
VCAN-210ENST00000513960 ZNF446Q9NWS9 450 aa11.15□□□□□ -0.62
VCAN-210ENST00000513960 RFX7Q2KHR2 1363 aa11.15□□□□□ -0.62
VCAN-210ENST00000513960 CAVIN2O95810 425 aa11.15□□□□□ -0.63
VCAN-210ENST00000513960 IFIT1P09914 478 aaKnown RBP11.15□□□□□ -0.63
VCAN-210ENST00000513960 ST5P78524 1137 aa11.15□□□□□ -0.63
VCAN-210ENST00000513960 PAXIP1Q6ZW49 1069 aaPredicted RBP11.15□□□□□ -0.63
VCAN-210ENST00000513960 RASSF4Q9H2L5 321 aa11.15□□□□□ -0.63
VCAN-210ENST00000513960 CEP126Q9P2H0 1117 aa11.15□□□□□ -0.63
VCAN-210ENST00000513960 MRC1P22897 1456 aa11.15□□□□□ -0.63
VCAN-210ENST00000513960 PHACTR2O75167 634 aa11.14□□□□□ -0.63
VCAN-210ENST00000513960 HMGB1P09429 215 aaKnown RBP11.14□□□□□ -0.63
VCAN-210ENST00000513960 HSPA2P54652 639 aa11.14□□□□□ -0.63
VCAN-210ENST00000513960 IRX3P78415 501 aaPredicted RBP11.14□□□□□ -0.63
VCAN-210ENST00000513960 APOBRQ0VD83 1088 aa11.14□□□□□ -0.63
VCAN-210ENST00000513960 CCDC57Q2TAC2 916 aa11.14□□□□□ -0.63
VCAN-210ENST00000513960 TAF7LQ5H9L4 462 aa11.14□□□□□ -0.63
VCAN-210ENST00000513960 SYNE3Q6ZMZ3 975 aa11.14□□□□□ -0.63
VCAN-210ENST00000513960 GOLGA6L1Q8N7Z2 621 aa11.14□□□□□ -0.63
VCAN-210ENST00000513960 CCDC150Q8NCX0 1101 aa11.14□□□□□ -0.63
VCAN-210ENST00000513960 TSPYL1Q9H0U9 437 aa11.14□□□□□ -0.63
VCAN-210ENST00000513960 EYA2O00167 538 aa11.14□□□□□ -0.63
VCAN-210ENST00000513960 CYP21A2P08686 494 aa11.14□□□□□ -0.63
VCAN-210ENST00000513960 CAPN2P17655 700 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms