RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 GABRR1P24046 479 aa13.5□□□□□ -0.25
SF3A1-209ENST00000496189 RPS25P62851 125 aaKnown RBP13.5□□□□□ -0.25
SF3A1-209ENST00000496189 COL10A1Q03692 680 aa13.5□□□□□ -0.25
SF3A1-209ENST00000496189 BAMBIQ13145 260 aa13.5□□□□□ -0.25
SF3A1-209ENST00000496189 NCR3LG1Q68D85 454 aa13.5□□□□□ -0.25
SF3A1-209ENST00000496189 C1orf122Q6ZSJ8 110 aa13.5□□□□□ -0.25
SF3A1-209ENST00000496189 SIGLECL1Q8N7X8 197 aa13.5□□□□□ -0.25
SF3A1-209ENST00000496189 PXT1Q8NFP0 134 aa13.5□□□□□ -0.25
SF3A1-209ENST00000496189 SPATA3Q8NHX4 192 aa13.5□□□□□ -0.25
SF3A1-209ENST00000496189 ORAI1Q96D31 301 aa13.5□□□□□ -0.25
SF3A1-209ENST00000496189 TBX15Q96SF7 602 aa13.5□□□□□ -0.25
SF3A1-209ENST00000496189 METTL8Q9H825 291 aaKnown RBP13.5□□□□□ -0.25
SF3A1-209ENST00000496189 ELL3Q9HB65 397 aaPredicted RBP13.5□□□□□ -0.25
SF3A1-209ENST00000496189 EXOSC4Q9NPD3 245 aaKnown RBP13.5□□□□□ -0.25
SF3A1-209ENST00000496189 RBFOX1Q9NWB1 397 aaKnown RBP13.5□□□□□ -0.25
SF3A1-209ENST00000496189 NDUFB11Q9NX14 153 aa13.5□□□□□ -0.25
SF3A1-209ENST00000496189 GABRPO00591 440 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 PIN1P1O15428 100 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 ANGPTL7O43827 346 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 FCN3O75636 299 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 SC5DO75845 299 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 KDM4BO94953 1096 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 VENTXO95231 258 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 UCHL1P09936 223 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 SRMP19623 302 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 PTGFRP43088 359 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 SNU13P55769 128 aaKnown RBP13.49□□□□□ -0.25
SF3A1-209ENST00000496189 EDDM3BP56851 147 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 ZP1P60852 638 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 ACTG1P63261 375 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 RSU1Q15404 277 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 NEDD8Q15843 81 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 KRTAP24-1Q3LI83 254 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 BRD3OSQ6XYD6 125 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 JAGN1Q8N5M9 183 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 FOXRED1Q96CU9 486 aaPredicted RBP13.49□□□□□ -0.25
SF3A1-209ENST00000496189 SNX22Q96L94 193 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 NR1H4Q96RI1 486 aaPredicted RBP13.49□□□□□ -0.25
SF3A1-209ENST00000496189 C19orf24Q9BVV8 132 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 ZNF696Q9H7X3 374 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 SEBOXQ9HB31 216 aaPredicted RBP13.49□□□□□ -0.25
SF3A1-209ENST00000496189 HMG20AQ9NP66 347 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 GSTK1Q9Y2Q3 226 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 FAM96BQ9Y3D0 163 aa13.49□□□□□ -0.25
SF3A1-209ENST00000496189 IGHV1-69DA0A0B4J2H0 117 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 CENPVL3A0A0U1RRI6 287 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 FUOMA2VDF0 154 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 K7N7A8 449 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 ZNF780AO75290 641 aaPredicted RBP13.48□□□□□ -0.25
SF3A1-209ENST00000496189 IGHV1-69P01742 117 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 GALP22466 123 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 RANBP1P43487 201 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 NPBWR2P48146 333 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 MTNR1BP49286 362 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 SRSF2Q01130 221 aaKnown RBP13.48□□□□□ -0.25
SF3A1-209ENST00000496189 GPR176Q14439 515 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 INSL4Q14641 139 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 ZNF146Q15072 292 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 GLT8D1Q68CQ7 371 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 OR8H2Q8N162 312 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 SLC25A28Q96A46 364 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 UQCC2Q9BRT2 126 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 METTL9Q9H1A3 318 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 SIRT7Q9NRC8 400 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 ING4Q9UNL4 249 aa13.48□□□□□ -0.25
SF3A1-209ENST00000496189 SF3B6Q9Y3B4 125 aaKnown RBP13.48□□□□□ -0.25
SF3A1-209ENST00000496189 F8VVB4 439 aa13.47□□□□□ -0.25
SF3A1-209ENST00000496189 F8VWA3 439 aa13.47□□□□□ -0.25
SF3A1-209ENST00000496189 CSTBP04080 98 aaKnown RBP13.47□□□□□ -0.25
SF3A1-209ENST00000496189 ZNF44P15621 663 aa13.47□□□□□ -0.25
SF3A1-209ENST00000496189 FABP5Q01469 135 aa13.47□□□□□ -0.25
SF3A1-209ENST00000496189 GRK1Q15835 563 aa13.47□□□□□ -0.25
SF3A1-209ENST00000496189 SSX1Q16384 188 aa13.47□□□□□ -0.25
SF3A1-209ENST00000496189 SYT6Q5T7P8 510 aaPredicted RBP13.47□□□□□ -0.25
SF3A1-209ENST00000496189 METAP1DQ6UB28 335 aaPredicted RBP13.47□□□□□ -0.25
SF3A1-209ENST00000496189 TMEM91Q6ZNR0 172 aa13.47□□□□□ -0.25
SF3A1-209ENST00000496189 BCL6BQ8N143 479 aaPredicted RBP13.47□□□□□ -0.25
SF3A1-209ENST00000496189 CHST4Q8NCG5 386 aa13.47□□□□□ -0.25
SF3A1-209ENST00000496189 OR4M1Q8NGD0 313 aa13.47□□□□□ -0.25
SF3A1-209ENST00000496189 C19orf12Q9NSK7 152 aa13.47□□□□□ -0.25
SF3A1-209ENST00000496189 IGKV1-12A0A0C4DH73 117 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 TRDV1A0A1B0GX56 115 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 hADV38S2A0JD32 116 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 SIRPB1O00241 398 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 IGKV1D-12P01611 117 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 CALCBP10092 127 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 PRTN3P24158 256 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 CALRP27797 417 aaKnown RBP13.46□□□□□ -0.25
SF3A1-209ENST00000496189 DUSP1P28562 367 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 OR3A4PP47883 348 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 PSMD7P51665 324 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 SCN1BQ07699 218 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 EDDM3AQ14507 147 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 FAM27D1Q5T7N8 215 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 RUSC1-AS1Q66K80 236 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 ELP2Q6IA86 826 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 CRIP3Q6Q6R5 217 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 ASCL4Q6XD76 172 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 RNF144BQ7Z419 303 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 PDZD9Q8IXQ8 264 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms