RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 SLC6A5Q9Y345 797 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 TMED7Q9Y3B3 224 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 ZNF175Q9Y473 711 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 IER3IP1Q9Y5U9 82 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 HEBP2Q9Y5Z4 205 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 SLC22A7Q9Y694 548 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 COLEC10Q9Y6Z7 277 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 KIAA1549LQ6ZVL6 1849 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 TRAV27A0A087WT01 109 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 TRAV14DV4A0A0A6YYC5 116 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 A0A0A6YYH2 397 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 A0A1B0GTI1 187 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 A0A1B0GWA3 101 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 TMEM89A2RUT3 159 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 RNF222A6NCQ9 220 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 IGLON5A6NGN9 336 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 A6NJ64 397 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 OR5K4A6NMS3 321 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 OR4C45A6NMZ5 311 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 ANKRD30BLA7E2S9 258 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 EFCAB7A8K855 629 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 A8MUA0 341 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 K7EQM0 130 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 CCL16O15467 120 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 NME2P1O60361 137 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 SRPX2O60687 465 aaPredicted RBP3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 ZNF254O75437 659 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 SYNGR4O95473 234 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 GPR75O95800 540 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 CD74P04233 296 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 MRPL3P09001 348 aaKnown RBP3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 GKN3PP0CG01 181 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 SLC35E2P0CK97 266 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 AKAIN1P0CW23 69 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 CD79AP11912 226 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 CCL5P13501 91 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 PRKACAP17612 351 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 SPI1P17947 270 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 CNR1P21554 472 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 OTX2P32243 289 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 PRSS3P35030 304 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 SFTPDP35247 375 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 TNFSF10P50591 281 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 PSMD4P55036 377 aaKnown RBP3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 TMEM50BP56557 158 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 PRPS1P60891 318 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 NAAAQ02083 359 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 LTB4RQ15722 352 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 GUCA2BQ16661 112 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 NDUFAF6Q330K2 333 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 PAN3Q58A45 887 aaKnown RBP3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 TMEM69Q5SWH9 247 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 HES5Q5TA89 166 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 LIPNQ5VXI9 398 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 NKAIN2Q5VXU1 208 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 OR4A47Q6IF82 309 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 LPCAT3Q6P1A2 487 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 FAHD2BQ6P2I3 314 aaPredicted RBP3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 ATRAIDQ6UW56 229 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 ALKAL2Q6UX46 152 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 ERASQ7Z444 233 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 ZNF546Q86UE3 836 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 TMEM17Q86X19 198 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 CCDC36Q8IYA8 594 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 ARL14Q8N4G2 192 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 C12orf45Q8N5I9 185 aaPredicted RBP3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 LRRC75AQ8NAA5 344 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 CYB561A3Q8NBI2 242 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 STEAP2Q8NFT2 490 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 OR4C16Q8NGL9 310 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 OR5AK2Q8NH90 309 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 COQ8AQ8NI60 647 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 FLVCR1-AS1Q8TAF5 88 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 C11orf45Q8TAV5 145 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 PCNPQ8WW12 178 aaKnown RBP3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 RGP1Q92546 391 aaPredicted RBP3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 PTX4Q96A99 478 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 FAM131CQ96AQ9 280 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 ZMYND19Q96E35 227 aaPredicted RBP3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 FAHD2AQ96GK7 314 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 GUCD1Q96NT3 240 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 PDCD1LG2Q9BQ51 273 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 ALKBH7Q9BT30 221 aaPredicted RBP3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 URM1Q9BTM9 101 aaKnown RBP3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 CHIAQ9BZP6 476 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 MFFQ9GZY8 342 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 ARL6Q9H0F7 186 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 WDR76Q9H967 626 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 GNB4Q9HAV0 340 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 BEX1Q9HBH7 125 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 APMAPQ9HDC9 416 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 TMEM100Q9NV29 134 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 SLC39A1Q9NY26 324 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 SPHK1Q9NYA1 384 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 DEC1Q9P2X7 70 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 THAP10Q9P2Z0 257 aaPredicted RBP3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 GNG8Q9UK08 70 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 PILRAQ9UKJ1 303 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 CLEC4AQ9UMR7 237 aa3.2□□□□□ -1.9
SMCHD1-208ENST00000583344 COPS3Q9UNS2 423 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms