RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 PGA5P0DJD9 388 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 GNB3P16520 340 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 FUT3P21217 361 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 CFHR2P36980 270 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 SRP9P49458 86 aaKnown RBP9.01□□□□□ -0.97
CLN3-248ENST00000636355 MECP2P51608 486 aaKnown RBP9.01□□□□□ -0.97
CLN3-248ENST00000636355 TMEM50BP56557 158 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 ERVK11-1P61568 191 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 MRPS15P82914 257 aaKnown RBP9.01□□□□□ -0.97
CLN3-248ENST00000636355 ZNF154Q13106 437 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 C4orf17Q53FE4 359 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 RNASE12Q5GAN4 147 aaKnown RBP9.01□□□□□ -0.97
CLN3-248ENST00000636355 STEAP1BQ6NZ63 245 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 HAGHLQ6PII5 290 aaPredicted RBP9.01□□□□□ -0.97
CLN3-248ENST00000636355 BTN2A1Q7KYR7 527 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 LURAP1LQ8IV03 231 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 FBXL14Q8N1E6 418 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 ARRDC1Q8N5I2 433 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 OR4C16Q8NGL9 310 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 OR10K1Q8NGX5 313 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 EMG1Q92979 244 aaKnown RBP9.01□□□□□ -0.97
CLN3-248ENST00000636355 UPRTQ96BW1 309 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 ARHGAP5-AS1Q96IT6 56 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 DIRC2Q96SL1 478 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 PRRT1Q99946 306 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 NRIP2Q9BQI9 281 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 PECRQ9BY49 303 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 C12orf4Q9NQ89 552 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 PLEKHJ1Q9NW61 149 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 CRIM1Q9NZV1 1036 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 MYEF2Q9P2K5 600 aaKnown RBP9.01□□□□□ -0.97
CLN3-248ENST00000636355 NLKQ9UBE8 527 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 ST3GAL6Q9Y274 331 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 KCNK7Q9Y2U2 307 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 NBASA2RRP1 2371 aa9□□□□□ -0.97
CLN3-248ENST00000636355 DIDO1Q9BTC0 2240 aaKnown RBP9□□□□□ -0.97
CLN3-248ENST00000636355 LINC00854A0A1B0GVQ3 168 aa9□□□□□ -0.97
CLN3-248ENST00000636355 VSTM5A8MXK1 200 aa9□□□□□ -0.97
CLN3-248ENST00000636355 MLNRO43193 412 aa9□□□□□ -0.97
CLN3-248ENST00000636355 SSX5O60225 188 aa9□□□□□ -0.97
CLN3-248ENST00000636355 PFDN1O60925 122 aa9□□□□□ -0.97
CLN3-248ENST00000636355 RAB3DO95716 219 aa9□□□□□ -0.97
CLN3-248ENST00000636355 DHFRP00374 187 aa9□□□□□ -0.97
CLN3-248ENST00000636355 PLATP00750 562 aa9□□□□□ -0.97
CLN3-248ENST00000636355 MT-ND4P03905 459 aa9□□□□□ -0.97
CLN3-248ENST00000636355 THBDP07204 575 aa9□□□□□ -0.97
CLN3-248ENST00000636355 PTHLHP12272 177 aa9□□□□□ -0.97
CLN3-248ENST00000636355 SPNP16150 400 aa9□□□□□ -0.97
CLN3-248ENST00000636355 GABRR1P24046 479 aa9□□□□□ -0.97
CLN3-248ENST00000636355 ADORA2A-AS1P86434 159 aa9□□□□□ -0.97
CLN3-248ENST00000636355 GUCA2AQ02747 115 aa9□□□□□ -0.97
CLN3-248ENST00000636355 ARFRP1Q13795 201 aa9□□□□□ -0.97
CLN3-248ENST00000636355 SRSF7Q16629 238 aaKnown RBP eCLIP9□□□□□ -0.97
CLN3-248ENST00000636355 RNASE10Q5GAN6 216 aaKnown RBP9□□□□□ -0.97
CLN3-248ENST00000636355 DMRTC1Q5HYR2 192 aa9□□□□□ -0.97
CLN3-248ENST00000636355 VAX1Q5SQQ9 334 aa9□□□□□ -0.97
CLN3-248ENST00000636355 AGAP6Q5VW22 663 aa9□□□□□ -0.97
CLN3-248ENST00000636355 RSBN1Q5VWQ0 802 aaPredicted RBP9□□□□□ -0.97
CLN3-248ENST00000636355 SHEQ5VZ18 495 aa9□□□□□ -0.97
CLN3-248ENST00000636355 NCCRP1Q6ZVX7 275 aaPredicted RBP9□□□□□ -0.97
CLN3-248ENST00000636355 FAM90A1Q86YD7 464 aa9□□□□□ -0.97
CLN3-248ENST00000636355 POC1AQ8NBT0 407 aa9□□□□□ -0.97
CLN3-248ENST00000636355 OR10AD1Q8NGE0 317 aa9□□□□□ -0.97
CLN3-248ENST00000636355 OR10Z1Q8NGY1 313 aa9□□□□□ -0.97
CLN3-248ENST00000636355 NUDCD2Q8WVJ2 157 aa9□□□□□ -0.97
CLN3-248ENST00000636355 ERGIC1Q969X5 290 aa9□□□□□ -0.97
CLN3-248ENST00000636355 SLAMF9Q96A28 289 aa9□□□□□ -0.97
CLN3-248ENST00000636355 MRPL24Q96A35 216 aaKnown RBP9□□□□□ -0.97
CLN3-248ENST00000636355 SLC25A21Q9BQT8 299 aaPredicted RBP9□□□□□ -0.97
CLN3-248ENST00000636355 RIMS4Q9H426 269 aaPredicted RBP9□□□□□ -0.97
CLN3-248ENST00000636355 SEBOXQ9HB31 216 aaPredicted RBP9□□□□□ -0.97
CLN3-248ENST00000636355 HES4Q9HCC6 221 aa9□□□□□ -0.97
CLN3-248ENST00000636355 CA10Q9NS85 328 aa9□□□□□ -0.97
CLN3-248ENST00000636355 NUDT15Q9NV35 164 aa9□□□□□ -0.97
CLN3-248ENST00000636355 TREM2Q9NZC2 230 aa9□□□□□ -0.97
CLN3-248ENST00000636355 MTCH1Q9NZJ7 389 aa9□□□□□ -0.97
CLN3-248ENST00000636355 ERRFI1Q9UJM3 462 aaPredicted RBP9□□□□□ -0.97
CLN3-248ENST00000636355 SCP2D1Q9UJQ7 156 aa9□□□□□ -0.97
CLN3-248ENST00000636355 ZDHHC8Q9ULC8 765 aa9□□□□□ -0.97
CLN3-248ENST00000636355 HCFC1P51610 2035 aa9□□□□□ -0.97
CLN3-248ENST00000636355 hCG_2014768A0A024R1R8 64 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 C7orf66A4D0T2 115 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 INMT-MINDY4F8WBC2 141 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 ABCD4O14678 606 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 GEMIN2O14893 280 aaKnown RBP8.99□□□□□ -0.97
CLN3-248ENST00000636355 PEX14O75381 377 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 OR7C1O76099 320 aaPredicted RBP8.99□□□□□ -0.97
CLN3-248ENST00000636355 NDUFB6O95139 128 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 BCL3P20749 454 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 GIFP27352 417 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 MDH2P40926 338 aaKnown RBP8.99□□□□□ -0.97
CLN3-248ENST00000636355 GATA4P43694 442 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 BSPH1Q075Z2 132 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 ZNF146Q15072 292 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 TAF9Q16594 264 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 TATDN3Q17R31 274 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 PIGYQ3MUY2 71 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 BEX5Q5H9J7 111 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 TMEM255AQ5JRV8 349 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 NCMAPQ5T1S8 102 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms