RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 SORL1Q92673 2214 aa12.13□□□□□ -0.47
CLSTN3-216ENST00000545663 MEX3AA1L020 520 aaKnown RBP12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 PRR23D1E9PI22 279 aaPredicted RBP12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 TXNDC12O95881 172 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 IFNGP01579 166 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 HMGN1P05114 100 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 PRR23D2P0DMB1 279 aaPredicted RBP12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 TPTEP56180 551 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 OR12D2P58182 307 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 RPL31P62899 125 aaKnown RBP12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 DYNC1I2Q13409 638 aaKnown RBP12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 ZNF273Q14593 569 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 KDM4DQ6B0I6 523 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 ZBTB49Q6ZSB9 765 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 TMEM179BQ7Z7N9 219 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 PACRGLQ8N7B6 248 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 NOL4LQ96MY1 436 aaPredicted RBP12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 ZNF570Q96NI8 536 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 RDH12Q96NR8 316 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 NIPSNAP1Q9BPW8 284 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 TLNRD1Q9H1K6 362 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 VCX3BQ9H321 246 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 SP140LQ9H930 580 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 TBC1D23Q9NUY8 699 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 USE1Q9NZ43 259 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 N6AMT1Q9Y5N5 214 aa12.12□□□□□ -0.47
CLSTN3-216ENST00000545663 M0R135 149 aa12.11□□□□□ -0.47
CLSTN3-216ENST00000545663 PRKACGP22612 351 aa12.11□□□□□ -0.47
CLSTN3-216ENST00000545663 OR3A4PP47883 348 aa12.11□□□□□ -0.47
CLSTN3-216ENST00000545663 ALDH3A2P51648 485 aa12.11□□□□□ -0.47
CLSTN3-216ENST00000545663 CAPZA1P52907 286 aa12.11□□□□□ -0.47
CLSTN3-216ENST00000545663 ZNF626Q68DY1 528 aa12.11□□□□□ -0.47
CLSTN3-216ENST00000545663 DNM1P34Q6PK57 102 aa12.11□□□□□ -0.47
CLSTN3-216ENST00000545663 PTCHD4Q6ZW05 846 aa12.11□□□□□ -0.47
CLSTN3-216ENST00000545663 LINC00476Q8WZB0 136 aa12.11□□□□□ -0.47
CLSTN3-216ENST00000545663 ZNF799Q96GE5 643 aa12.11□□□□□ -0.47
CLSTN3-216ENST00000545663 ERMAPQ96PL5 475 aaPredicted RBP12.11□□□□□ -0.47
CLSTN3-216ENST00000545663 TSSK6Q9BXA6 273 aa12.11□□□□□ -0.47
CLSTN3-216ENST00000545663 LIN7BQ9HAP6 207 aa12.11□□□□□ -0.47
CLSTN3-216ENST00000545663 ZFP57Q9NU63 452 aa12.11□□□□□ -0.47
CLSTN3-216ENST00000545663 NLKQ9UBE8 527 aa12.11□□□□□ -0.47
CLSTN3-216ENST00000545663 ZNF222Q9UK12 451 aa12.11□□□□□ -0.47
CLSTN3-216ENST00000545663 SAC3D1A6NKF1 404 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 TRIM64CA6NLI5 447 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 ANKRD30BLA7E2S9 258 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 RENP00797 406 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 ALPLP05186 524 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 PGA5P0DJD9 388 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 SLC2A1P11166 492 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 PSG2P11465 335 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 SLC6A1P30531 599 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 DAPP51397 102 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 DLX6P56179 175 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 KRR1Q13601 381 aaKnown RBP12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 SLC36A3Q495N2 470 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 HS3ST5Q8IZT8 346 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 CIB1Q99828 191 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 SLC25A33Q9BSK2 321 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 LINC00527Q9UJ94 153 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 LRP12Q9Y561 859 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 IER3IP1Q9Y5U9 82 aa12.1□□□□□ -0.47
CLSTN3-216ENST00000545663 RIIAD1A6NNX1 92 aa12.09□□□□□ -0.47
CLSTN3-216ENST00000545663 SOCS2O14508 198 aa12.09□□□□□ -0.47
CLSTN3-216ENST00000545663 CASQ2O14958 399 aaPredicted RBP12.09□□□□□ -0.47
CLSTN3-216ENST00000545663 LDLRAD4O15165 306 aa12.09□□□□□ -0.47
CLSTN3-216ENST00000545663 LY6G6CO95867 125 aa12.09□□□□□ -0.47
CLSTN3-216ENST00000545663 CRABP1P29762 137 aa12.09□□□□□ -0.47
CLSTN3-216ENST00000545663 CDKN2AP42771 156 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-216ENST00000545663 CRISP1P54107 249 aa12.09□□□□□ -0.47
CLSTN3-216ENST00000545663 FXYD6P3P58550 94 aa12.09□□□□□ -0.47
CLSTN3-216ENST00000545663 C16orf82Q7Z2V1 217 aa12.09□□□□□ -0.47
CLSTN3-216ENST00000545663 CBR4Q8N4T8 237 aa12.09□□□□□ -0.47
CLSTN3-216ENST00000545663 OR11H6Q8NGC7 330 aa12.09□□□□□ -0.47
CLSTN3-216ENST00000545663 CAPSLQ8WWF8 208 aa12.09□□□□□ -0.47
CLSTN3-216ENST00000545663 EGLN3Q9H6Z9 239 aa12.09□□□□□ -0.47
CLSTN3-216ENST00000545663 SLC25A19Q9HC21 320 aa12.09□□□□□ -0.47
CLSTN3-216ENST00000545663 RRP15Q9Y3B9 282 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-216ENST00000545663 hCG_1809904A0A1W2PP81 198 aa12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 A0A1W2PPE2 198 aa12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 A0A1W2PR64 198 aa12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 A0A1W2PRV1 198 aa12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 EI24O14681 340 aa12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 SOX14O95416 240 aa12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 PIPP12273 146 aaPredicted RBP12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 ZNF3P17036 446 aa12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 BLVRAP53004 296 aa12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 LCNL1Q6ZST4 164 aa12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 OR6V1Q8N148 313 aa12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 OR13D1Q8NGV5 346 aa12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 OR10Z1Q8NGY1 313 aa12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 OR2T27Q8NH04 317 aa12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 AKR1E2Q96JD6 320 aa12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 GABARAPL3Q9BY60 117 aa12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 FGF23Q9GZV9 251 aaPredicted RBP12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 SRA1Q9HD15 236 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 RHBDD3Q9Y3P4 386 aa12.08□□□□□ -0.48
CLSTN3-216ENST00000545663 A0A1W2PPH5 198 aa12.07□□□□□ -0.48
CLSTN3-216ENST00000545663 C17orf98A8MV24 154 aa12.07□□□□□ -0.48
CLSTN3-216ENST00000545663 H3BUI4 141 aa12.07□□□□□ -0.48
CLSTN3-216ENST00000545663 SLC25A17O43808 307 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms